<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15635

Description Uncharacterized protein
SequenceMDNTNWRPNAQGGEPAIDTGDWRAQLQPDSRQRIVNKIMETLKRQLPFSGQDGLEELKIIAVRFEEKIYAAATSQSDYLRKISLKMLTLESKSQKPVPNPLPPNAPGNNNRPPDPGASHSMQPQVHNQGQSLPIPLTTNQSQTRQQLLSQTIQNNMTSTGVQSSASLTSALPSVSGLTQNSIPSVVCQNPNIQNISGVPQNTVGNAMGQGVPSNIFSNAQRQMPGRQQVVPQQQQQQSQNPQQYLYQQQLQLMKQKYQHGNLPHSLVQSHIQQQQQQQQQQQNLLQQTQLQSSQSSMQTSSVMQPSMMQSVISGIQQGQPPSVQQSTQSMLQQHTQSVLRQQQQPQQASSIHQQQTSMMQQQQQLMNQQSNVANMQQNLLIGQQNNVGDMQQQQQQRLLSQQNNVQNLQQQQQQLMAQQNNLLSMHQQQLGSQSNVSGLQHQQQQQLLGSQPGNSSMQTNQHSVQMLQQPKGPLQQEPANNLVPTQGQQSQSQSSQQQLMSQIQSQPTQLQQQLGLQQQSNQLQRDMQTRLQASTQAPASLLQQQNVIDQQKQLYQSQRPLPETSSTSLDSTAQTRHTNGGDLQEEVYQKIKSMKEMYLPELNEMYQKIATKLQQHDSLPQQPKSEQLEKLKIFKNMLERIIAFLQVSKNNILPGFKEKLGSYEKQIINFINTNRPRKPIPSLQQGQIPQPHIQQSQSQVSQVQSHENQMNPQMQQSMNLQGSVPAMQQNNMSNLQHNSLSSLSGSTSQQNMMNSLQPASNLDSSQGNAMSSLQLAAVGSLQQNPVSTTQQANINNLSSQSGVNMLQPNVPLQSHPNMLQQQHLKQQQEQQMLQNQQLKQQIHQRQMQQQLLQKQQLLQQQQQQQLHQQAKQQLPAQMQVHQMNDVNELKMRQGIGVKPGVFQQQHLSAGQRTAYPHQQMKPGSSYPISSPQLLQAASPQFSQHSPQVDQQNILSSLTKIGTPLQSANSPFVVPSPSTPLAPSPMPGDSEKPSGISSLSNAGNIGQQQIGAQVLAPSLAIGTPGISASPLLAECTGSDGAHGNALTTASGKSSVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTNCRIQARNCITQDGVNGTRKMRRYTSAMPLNVVSSASSISDSFKQLNGPETSDLESTATSTVKKPRIEANHALLEEIREINQRLIDTVVDISEEDVDPTAAGSAAGGGEGTIVKCSFSAVALSPNLKSQYASSQMSPIQPLRLFVPTNYPNCSPILLDVLPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARAVISEHAQQSGGGSFSSKYGTWENCLSAV
Length1345
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.03
Grand average of hydropathy-0.738
Instability index73.53
Isoelectric point9.20
Molecular weight148009.05
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15635
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     199.88|      30|      30|     346|     375|       1
---------------------------------------------------------------------------
  264-  293 (38.91/ 7.93)	HSLVQSHIQQQ..QQQQQQQQ.N......LLQQTQLQSS
  318-  345 (35.54/ 6.41)	GQPPSVQQSTQ..SMLQQHTQ.S......VLRQQQ..QP
  346-  375 (54.13/14.82)	QQASSIHQQQT..SMMQQQQQ.L......MNQQSNVANM
  376-  408 (36.47/ 6.83)	QQNLLIGQQNNvgDMQQQQQQrL......LSQQNNVQNL
  701-  735 (34.82/ 6.08)	SQVQSHENQMN..PQMQQSMN.LqgsvpaM.QQNNMSNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     162.93|      29|      31|     819|     848|       2
---------------------------------------------------------------------------
  419-  451 (37.99/ 7.16)	QNN..LlSMHQQQ.....LGSQsnvsGLQHQQQQQLLGSQ
  489-  517 (42.49/ 9.04)	QSQ..S.QSSQQQL....MSQI....QSQPTQLQQQLGLQ
  807-  836 (36.57/ 6.57)	QPNvpL.QSH.....pnmLQQQ....HLKQQQEQQMLQNQ
  837-  868 (45.89/11.62)	QLK..Q.QIHQRQMqqqlLQKQ....QLLQQQQQQQLH.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     230.28|      53|     113|      75|     134|       3
---------------------------------------------------------------------------
   75-  127 (89.83/25.77)	QSDYLRKIS.LKMLTLESKSQKPVPNPLPPNA....PGNNNRPPDPGASHSMQPQVHN
  145-  194 (76.81/24.91)	QQLLSQTIQ.NNMTSTGVQSSASLTSALPSVS....GLTQNSIP...SVVCQNPNIQN
  195-  245 (63.64/16.74)	.......ISgVPQNTVGNAMGQGVPSNIFSNAqrqmPGRQQVVPQQQQQQSQNPQQYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.94|      21|      28|    1010|    1030|       4
---------------------------------------------------------------------------
  986-  998 (19.79/ 6.65)	PGDSEKPS......GIS.S.L
 1010- 1030 (36.52/18.61)	GAQVLAPSLAIGTPGISASPL
 1039- 1059 (26.63/11.54)	GAHGNALTTASGKSSVTEQPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     274.10|     102|     113|    1072|    1178|       5
---------------------------------------------------------------------------
  537-  607 (96.51/51.28)	APASLlQQQNVIDQQK.QLYQSQRPLPETSSTS..LDSTAQTRHTNGGDLQEEVYQKIKSMK....EMYLPELNEMYQ.................................................
 1072- 1117 (40.83/21.00)	..................................................................KALSASVSDIGSvvSMIDRI............AGSAPGNGSRAAVGEDL..VAMT.NCRIQ
 1118- 1241 (136.76/85.97)	ARNCI.TQDGVNGTRKmRRYTSAMPLNVVSSASsiSDSFKQLNGPETSDLESTATSTVKKPRieanHALLEEIREINQ..RLIDTVvdiseedvdptaAGSAAGGGEGTIVKCSFsaVALSpNLKSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.17|      12|      15|     748|     759|       6
---------------------------------------------------------------------------
  748-  759 (25.10/ 9.74)	SQQNMMNSLQPA
  765-  776 (21.07/ 6.97)	SQGNAMSSLQLA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.05|      16|      16|    1248|    1263|       7
---------------------------------------------------------------------------
 1248- 1263 (30.34/19.13)	SPI..QPLRLFVPTNYPN
 1265- 1282 (22.72/12.48)	SPIllDVLPVEISKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.24|      13|      67|     613|     627|       9
---------------------------------------------------------------------------
  613-  627 (13.46/11.48)	LQQhDSLPQqPKSEQ
  683-  695 (23.78/ 9.97)	LQQ.GQIPQ.PHIQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15635 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FINTNRPRKPIPSLQQGQIPQPHIQQSQSQVSQVQSHENQMNPQMQQSMNLQGSVPAMQQNNMSNLQHNSLSSLSGSTSQQNMMNSLQPASNLDSSQGNAMSSLQLAAVGSLQQNPVSTTQQANINNLSSQSGVNMLQPNVPLQSHPNMLQQQHLKQQQEQQMLQNQQLKQQIHQRQ
2) HTQSVLRQQQQPQQASSIHQQQTSMMQQQQQLMNQQ
3) LESKSQKPVPNPLPPNAPGNNNRPPDPGASHSMQPQVHNQGQSLPIPLTTNQSQTRQQLLSQTIQNNMTSTGVQSSASLTSALPSVS
4) MDNTNWRPNAQGGEPAIDTGDWRAQLQPDSRQRIVNKIMETL
5) QKQLYQSQRPLPETSSTSLDSTAQTRHTNGGDLQEEV
6) QNLLQQTQLQSSQSSMQTSSVMQPSMMQSVISGIQQGQPPSVQQSTQSMLQ
7) QNPNIQNISGVPQNTVGNAMGQGVPSNIFSNAQRQMPGRQQVVPQQQQQQS
8) QQQQQQLHQQAKQQLPAQMQVHQMNDVNELKMRQGIGVKPGVFQQQHLSAGQRTAYPHQQMKPGSSYPISSPQLLQAASPQFSQHSPQVDQQNILSSLTKI
9) QQQQQQLMAQQNNLLSMHQQQLGSQSNVSGLQHQQQQQLLGSQPGNSSMQTNQHSVQMLQQPKGPLQQEPANNLVPTQGQQSQSQSSQQQLMSQIQSQPTQLQQQLGLQQQSNQLQRDMQTRLQASTQAPASLLQQQNVID
10) QSANSPFVVPSPSTPLAPSPMPGDSEKPSGISSLSNAG
11) VANMQQNLLIGQQNNVGDMQQQQQQRLLSQQNNVQN
670
334
89
1
551
282
188
860
409
965
372
846
369
175
42
587
332
238
960
549
1002
407










Molecular Recognition Features






MoRF SequenceStartStop




NANANA