<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15630

Description Mediator of RNA polymerase II transcription subunit 9
SequenceMDQSYTGGSWTMIPNVPSHSNSPAHSNQDQYYLHQQSQQQQQQFNQFQQQQQQQQQFQQQHQFQQQQQQQQRLIQQQQQQQNQQHQSLASHFHLLHLVENLAEVIENGTRDQHSDALITELNNHFEKCQQLLNSISTSINSKSMTVEGQKRKVEECEQLLNQRRDLLGKYRSSVEELIKSEL
Length182
PositionMiddle
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.06
Grand average of hydropathy-1.269
Instability index67.61
Isoelectric point6.03
Molecular weight21535.24
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15630
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.05|      24|      27|      36|      62|       1
---------------------------------------------------------------------------
   34-   60 (40.49/16.18)	HQQSQQQQQQfNQFQQQQQQQQqfQQQ
   61-   84 (48.56/12.82)	HQFQQQQQQQ.QRLIQQQQQQQ..NQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15630 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QSYTGGSWTMIPNVPSHSNSPAHSNQDQYYLHQ
3
35










Molecular Recognition Features






MoRF SequenceStartStop




1) GGSWTM
2) QDQYYLHQQS
7
28
12
37