<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15625

Description Uncharacterized protein
SequenceMRMDIDDFRSILESSGVDVWTFIDTAILVASSDFGDELKQRRDKIVEMLYASSSSGRCRNCDFDMDGISNRHELKENRHEVKGGDGGGSGSPSTTPRSIHGDDDEEEDDELDPYAGLFDDEQKKILEIKQHLEDPDQSEDSLVDLLQSLADMDITFKALKETDIGRHVNRLRKHSSNDVRRLVKQLVRKWKEIVDEWVRLNPQGDQASSALMADGDSPQRKIPQNVHHQVPDFAYSPNPHNGSSGSDKNNSEPERKPKPVPRKEAPPRPTQQSVPISASNNFQRQKEQQERARDFDSERLASARKRLQENYKEALNAKKQRTIQVMDIHEIPKPKNAFFSKNKGGGSQGRQW
Length352
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.05
Grand average of hydropathy-1.106
Instability index53.53
Isoelectric point5.77
Molecular weight40025.76
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP15625
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.56|      28|      34|     201|     231|       1
---------------------------------------------------------------------------
  201-  231 (43.00/31.43)	NPQgdQASSALMADGDSPQRKiPQNV.HHQVP
  238-  266 (47.56/24.53)	NPH..NGSSGSDKNNSEPERK.PKPVpRKEAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.29|      52|     255|      33|      89|       2
---------------------------------------------------------------------------
   33-   89 (79.41/66.88)	DFGDE.LKQRRDKIVEMLYASSSSGRCRNCDFdMDgIsnrHELKENRHE.VKGGDGGGS
  294-  347 (79.88/50.28)	DFDSErLASARKRLQENYKEALNAKKQRTIQV.MD.I...HEIPKPKNAfFSKNKGGGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.47|      18|      30|     102|     119|       3
---------------------------------------------------------------------------
  102-  119 (32.92/18.04)	DDDEEEDDELDPYAGLFD
  134-  151 (30.54/16.28)	DPDQSEDSLVDLLQSLAD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15625 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HELKENRHEVKGGDGGGSGSPSTTPRSIHGDDDEEEDDELDPYAG
2) NPQGDQASSALMADGDSPQRKIPQNVHHQVPDFAYSPNPHNGSSGSDKNNSEPERKPKPVPRKEAPPRPTQQSVPISASNNFQRQKEQQERARDFDSERLASARKRLQENYKEALNAKKQRTIQVMDIHEIPKPKNAFFSKNKGGGSQGRQW
72
201
116
352










Molecular Recognition Features






MoRF SequenceStartStop




1) AFFSKNK
337
343