<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15621

Description Uncharacterized protein
SequenceMAEKQLIVAVEGSAAMGPFWQTILSEYLEKMIRSFCGSDLTGQKPSPSNAELSLVTFYSHGSYCACLVQRSGWTRDVDIFLQWLSAIPFAGGGFNDAAIAEGLSEALMMFPCTQNGSQAQQNIEGQRHCVLIAASNPHPLPTPVYRPQIQNLEQSENIDPQTESRLSDAETVAKSFPQCSVSLSVICPKQLPKIRAIYTAGKRNIRAADPAVDNVKNPHFLVLISENFMEARASLSRPGVANLPSNQSPVKLDVASVASAAGPAPSSIPSVNGSIMNRPPMSVGTVPTATVKVEPTTVTSMAPGPAFPHITSVRPASQPVPSLQTSSPPTTTQEMIASGENVPDLKPSVSGMQQSVRPVPPGTANVSILNNLSQARQVMNSAALTGGTTIGLQSVTQTPVAMHMSNMISSGMASSVPAAQNVFSSGQPGITSIAGSGTTQVAANSGLGSFTSATSNISGNSNLGISQPISNLQGGVSMGPSVPGMSQGSLSGAQMVQSGIGMNQNMMSGLGPSGVSSGSSTMIPTPGIPQQAQSGMQSLGVNNNSAANMPLSQQTTSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQMQQQHHQQMQPQQHPQLQQQQLPQLQQQQLPQLQQQQQLPQLQQQQQLPQMQHQQQHPQLQQQQQLSQLQQQQQLQQQQPQQLPQLQQQQQQLQQQLPQQQQMVGTGMGQAYVQGPGRSQLVSQGPVSSQGPTNMPGGGFMS
Length836
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.04
Grand average of hydropathy-0.343
Instability index67.18
Isoelectric point8.79
Molecular weight89256.03
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15621
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     179.68|      15|      15|     709|     723|       1
---------------------------------------------------------------------------
  693-  707 (31.97/ 9.92)	QQM.Q.QQHHQQM.QPQQ
  709-  723 (35.61/11.88)	PQL.Q.QQQLPQL.QQQQ
  725-  741 (26.81/ 7.14)	PQL.QqQQQLPQLqQQQQ
  743-  759 (27.53/ 7.53)	PQM.QhQQQHPQLqQQQQ
  761-  776 (26.91/ 7.19)	SQLqQ.QQQLQQQ.QPQQ
  778-  791 (30.84/ 9.31)	PQL.Q.QQQ.QQL.QQQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.14|      22|      23|     464|     485|       2
---------------------------------------------------------------------------
  324-  345 (25.54/ 8.23)	QTSSPPTTTQEMIASGENVPDL
  411-  430 (25.35/ 8.11)	GMASSVPAAQNVFSSGQ..PGI
  464-  485 (42.25/19.34)	GISQPISNLQGGVSMGPSVPGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     208.45|      37|      38|     235|     271|       4
---------------------------------------------------------------------------
  111-  143 (35.90/12.28)	...P..CTQNGSQAQQ...NIEGQRHCVlIA.ASNPHPLPTP....
  146-  181 (37.18/12.95)	..RP..QIQNLEQSEN....IDPQTESR.LS.DAETVAKSFPqcSV
  183-  218 (38.33/13.55)	LSVI..CPKQLPKIRAiytAGKRNIR......AADPAVDNVK..NP
  235-  271 (58.98/24.42)	LSRP..GVANLPSNQS...PVKLDVASV.AS.AAGPAPSSIP..SV
  276-  312 (38.07/13.42)	MNRPpmSVGTVPT..A...TVKVEPTTV.TSmAPGPAFPHIT..S.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.98|      18|      56|     535|     554|       6
---------------------------------------------------------------------------
  507-  524 (30.24/13.30)	MS.....GLGPSGVSSGSSTMIP
  528-  550 (26.75/14.26)	IPqqaqsGMQSLGVNNNSAANMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.07|      11|      20|     649|     659|      11
---------------------------------------------------------------------------
  649-  659 (18.74/10.30)	KLCAVIQLPSQ
  681-  691 (16.33/ 7.84)	MVVFKPQISSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.78|      13|      65|     486|     498|      13
---------------------------------------------------------------------------
  486-  498 (22.80/10.43)	SQGSLSGAQMVQS
  552-  564 (19.98/ 8.08)	SQQTTSALQSAQS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15621 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GMNQNMMSGLGPSGVSSGSSTMIPTPGIPQQAQSGMQSLGVNNNSAANMPLSQQT
2) PISNLQGGVSMGPSVPGMSQGSLSGAQMVQS
3) PSSIPSVNGSIMNRPPMSVGTVPTATVKVEPTTVTSMAPGPAFPHITSVRPASQPVPSLQTSSPPTTTQEMIASGENVPDLKPSVSGMQQSVRPVPPGTANVSILNNL
4) QVMNSAALTGGTTIGLQSVTQTPVAMHMSNMISSG
5) VGTGMGQAYVQGPGRSQLVSQGPVSSQGPTNMPGGGFMS
501
468
265
377
798
555
498
372
411
836










Molecular Recognition Features






MoRF SequenceStartStop




NANANA