<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15616

Description Uncharacterized protein
SequenceMAVSFESGVWDCVIEITKVAQQKGSDPLLWALQISSNLSSYGVILPSPEFADVLVSYICWDNNVSILWKFLEKALVFKIVPPLMVLALLSERVIPCRRSQPVAYRLFMELLKRYAFSLKAQINTPNYAKVMKSIDATLHLSQNFGLQSSNPGILMVEFIYSIVWQLLDASLDDEGLLELTPEKNSGWATKLQEMEIDVHENYDEKRAEHLEKLQNLNTEMAIEIIGLFLKNKLTSRILYLAQQNLPTHWVRFVQRLQLLGANSSALRNLKTLTAEDLLQLTSGLVLTQESKKGSLQKLHAVMALGSLVSSAGVCHGATRSALWLPLDLALEDAMDGYQVNATSAIEIITGLTKTLQAINSTAWHETFLGLWIAALRLVQRERDPIEGPIPHLDTRLSILLSIIPLVVADIIEEEENVPIDESEWSSTNQWKEKRVPGKRRNDLVSSLQLLGDYQGLLSPPQSVVSAANQAAAKAMLFVSGINVGSAYFECINMNDMPINCSGNMRHLIVEACIARNLLDTSSYFWPGYVNGSISQIPHSVASQVPGWSSFMKGALLAPAMISALVSSPASSLAELEKVYELAAKGSDDEKISAATILCGASLLRGWNIQEHTVQFITRLLSPPVPDDYSGVDSHLISYAPILNVLVVGLASVDCVQIFSLHGLVPQLACSLMPICEVFGTCVPDVSWTLPSGEEISAHAVFSNAFALLLKLWRFNHPPLEHGVGDVPTVGSQLTPEYLLSVRNSYLVSSGNVHKDRNKRRLSAVATSSSPQPIFVDSFPKLKVWYRQHQKCIASTLSGLVHGSPVHQTVNVLLNMMFRKINRGSQSLTTITSGSSCSSGSGNEDSSLRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVSRGVWKPVYMNGTDWPSPAANLSNVEEKIKKILAATGVDIPSLAAGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNSDAVFQLLKSCFAATLGLGTTAISSNGGVGALLGHGFGSHFRGGISPVAPGILYLRVYRSIREIVFITEEIISLIMHSVREIACNGLPREKIEKLKRPKNGLRCGQVSLTAAMTRVKLAASLGASLVWLSGGVGLVQSLFKETLPSWFIAVHRSDQEEGPQGMVAMLRGYALAYFAVLCGAFAWGVDLSSSASKRRPKVLGSHMEFLASALDGKISLGCDWATWRSYVSGFVSLMVGCTPSWVLEVDADVLERLSKGLRQWDEETLALALLGVGGVETMGAAAEQIIEEQ
Length1323
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.08
Grand average of hydropathy0.185
Instability index45.83
Isoelectric point6.29
Molecular weight143974.70
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15616
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.13|      49|      56|    1198|    1246|       1
---------------------------------------------------------------------------
 1198- 1246 (84.74/52.73)	AMLRGYALAYFAVLCGAF.AWGVDLSSSASKRRPKVLGS.HMEFLASALDG
 1255- 1305 (74.39/45.37)	ATWRSYVSGFVSLMVGCTpSWVLEVDADVLERLSKGLRQwDEETLALALLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.74|      24|      56|     541|     568|       3
---------------------------------------------------------------------------
  541-  568 (37.22/30.17)	ASQVPGWSSFMKGAllapAMISALVSSP
  600-  623 (43.51/25.29)	ASLLRGWNIQEHTV....QFITRLLSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.85|      31|     210|     629|     671|       7
---------------------------------------------------------------------------
  632-  662 (52.51/26.73)	DSHLISYAPILNVLVVGLASVDCVQIFSLHG
  844-  874 (52.33/22.77)	DSSLRPKLPAWDILEAVPFVVDAALTACAHG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.47|      30|      50|     304|     336|       9
---------------------------------------------------------------------------
  304-  336 (42.84/33.21)	LGSLVSSAGvcHgATRSALWL.PLDLAL..EDAMDG
  355-  387 (45.63/24.09)	LQAINSTAW..H.ETFLGLWIaALRLVQreRDPIEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.16|      40|     188|     765|     804|      10
---------------------------------------------------------------------------
  765-  804 (73.57/42.37)	ATSSSPQ..PIFVDSFPKLKVWYRQHQKC......IASTLSGLVHGSP
  952-  999 (57.59/31.62)	AGGSSPAtlPLPLAAFVSLTITYKIDKASerflnlAGPALESLAAGCP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15616 with Med33 domain of Kingdom Viridiplantae
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