<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15611

Description Uncharacterized protein
SequenceMICEATIDRIVELLKLTNSEVNCWQDWLVFSDIFFFLMKSGCIDFVDFVDKLVSRLTEGDQHILRTNHVTWLLAQIIRVELVMNALTTDARKVETTRKIISFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRNVTKGDRMIDYMNMDDRSIGMFWVVSYTMAQPACETVVNWLSSGGVSEFLPGANMQSNERLMVMREVSPLPMSLLSGLSLNLCLKLVFQLEDSLFAGQVIPSIAMVETYCRLLLLAPHSLFRSHFSHLAQRYPSLLSKPGFTLLVFEIVNYRLLPLYRYQGKSKSLMYDVTKIVSTLKGKRGDHRIFRLAENLCMNLILSLREFFSVKREGKGPTEFTETLNRVTVITLAIIIKTRGIADADHLVYLQTMLEQIMATSQHTWSEKTLRHFPPLLRDALIGRIDKRGQAIQAWQQAETTVIHQCTQLLSPSADPSYVTTYINHSFPQHRQYLCAGAWILMQGHPENINSEKLARVLREFSPEEVTANIYTMVDVLLHHIHMELQHGHSLQDLLLKTCANLAFFVWTHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQQRLKLFCMNRGPPEHWLFSGIFKRLELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLIENDAIDQADRVLAMYSPFLAYHPFRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNPVMCPPPEYFATLLLGLVNNVLPPLNTNSKYGSVADSLCSSMRNPNPKTPATSQSGPTNTSEGQKAFYQIQDPGTYTQLVLETAVIELLSLPVTASQIVSSLVQIVVNIQPTLIQSSNGLHGAPNGVVQGSGLPTSPSGGSTDSLGASRSTPSVSGINTANFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHLQLYMEASRIIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLEGTHVIIKHLRPITSVAVLRIAFRIMGPLLPRLANARSLFSKTLLLLLNTMVDVFGRNSQPSTPAEASEIADLIDFLHHVVHYEGQGGPVQANSKPRPEVLAQCGRAAESLRPDVQHLLSHLKPDMNSSIYAATHPKLVQNPSSSLG
Length1142
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.08
Grand average of hydropathy-0.010
Instability index40.39
Isoelectric point6.77
Molecular weight128443.75
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15611
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     222.22|      74|     325|     222|     312|       1
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  222-  311 (101.03/101.29)	REVSPLPM..........SLLSGLSLnLCLKLVfQLEDSLFAGqvipsiamveTYCRLLLlapHSLFRSHFShLAQRYPSLLSKPGFTLL.VFEIVNYRLL
  578-  662 (121.19/71.54)	RDDDPHALrivislldrqELQQRLKL.FCMNRG.PPEHWLFSG..........IFKRLEL...QKALGNHLS.WKDRYPTFFDDIAARLLpVIPLIVYRLI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     290.33|      95|     346|      50|     146|       2
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   50-  146 (151.82/99.66)	DKLVSRLTEGDQhILRTNHVTWlLAQIIR..VELVMNAL..TTDAR..KVETTRK..IISFHREDRSSDPNNPQSILLDFISSC.....QNL..RIWSLNTSTREYLNNEQL
  399-  508 (138.50/82.68)	DHLVYLQTMLEQ.IMATSQHTW.SEKTLRhfPPLLRDALigRIDKRgqAIQAWQQaeTTVIHQCTQLLSPSADPSYVTTYINHSfpqhrQYLcaGAWILMQGHPENINSEKL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.69|      41|     783|     152|     203|       3
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  152-  203 (64.30/87.98)	IDE.WWrnVTKGDRMIDYMnmdDRSIGmfwvvsYTM......AQPACETVV................NWLSSGGV
  937- 1000 (54.39/41.84)	IKEsWW..LTDGKRSLGEL...DSAVG......YALldptwaAQDNTSTAIgnivallhaffsnlpqEWLEGTHV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     290.63|      94|     180|     825|     927|       4
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  825-  927 (148.92/115.48)	PVTASQIVSSLVQIVVNIQPTLIQS....SNGLHGAPNGVVQGSG...LPTSPSGGS.....TDSLGASRSTPSVSGINTANFVSRSGytcqqlscLLIQaCGLLLAQLPPDF.HL
 1007- 1113 (141.71/89.51)	PITSVAVLRIAFRIMGPLLPRLANArslfSKTLLLLLNTMVDVFGrnsQPSTPAEASeiadlIDFLHHVVHYEGQGGPVQANSKPRPE........VLAQ.CGRAAESLRPDVqHL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15611 with Med23 domain of Kingdom Viridiplantae
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