<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15608

Description Uncharacterized protein
SequenceMNNQQQQQQQQQQQQVGSGGNKDPEEESVGQSLEIVAKAAGSDKAEPLSSEEESVEKPDDPMEEDSVSPATVFCIRLKQPRSNLQYKMSVPELCRNFSAVTWCGKLNAIACASETCARIPSSNTNPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGPANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSANSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQSNATPKWFCTSKGLLGAGPSGIMAADAIVTDSGAMHVAGVPIVNPSTIVVWEVTPGPGPGFQATPKTSASTGVPPSLNPPNWSGFAPLAAYLFSWQEYLISEAKQGKKHADQDFSDIVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPPTNDFKTHQAVTAGLISDARKTSDSGVEKAKSLTFDPFDLPSDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFAPVDSYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPGSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDNIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSNLVPEPWLASGETLSHIDPEAMAVEPNLIPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVNSPTQSSASPATSQGGQNGTTSSTGSTQMQAWVQGAIAKISSSGDAVSNSTPNPITGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQRGGAQRSADASMQKPQSVAPAKVEESNSVSSKPAPTMVRSDEGQAPRGSQLVPGAKGVEDGPAGRLRLGCGNAGQGYTFEEVKVLFLILMDLCRRTSALAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDMCSADDTPRMSSYTDSIDCSSLENCDVYYGVNGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGAANAPSQNDREAWWISRWAYGCPMCGGTWVRVV
Length1251
PositionTail
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.08
Grand average of hydropathy-0.232
Instability index48.74
Isoelectric point6.10
Molecular weight135290.80
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15608
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.62|      18|      19|     786|     803|       1
---------------------------------------------------------------------------
  786-  803 (30.15/20.76)	LIPSIQAYVDAILDLASH
  804-  821 (32.47/22.94)	FITRLRRYASFCRTLASH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.10|      36|     171|     406|     444|       2
---------------------------------------------------------------------------
  406-  441 (59.85/29.72)	VSNFSAYVSPEAA...AQSAATTTWGSGVTAVAFD.PTRG
 1175- 1207 (50.36/25.93)	...LGAYLGIMGS...RRDVVTAVWKTGLEGVWYK.CIRC
 1208- 1244 (50.89/23.54)	LRQTSAFASPGAAnapSQNDREAWW...ISRWAYGcPMCG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.85|      19|      19|     831|     849|       3
---------------------------------------------------------------------------
  831-  849 (33.71/18.69)	RNMVNSPTQSSASPATSQG
  851-  869 (35.13/19.81)	QNGTTSSTGSTQMQAWVQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.66|      11|      19|     224|     234|       4
---------------------------------------------------------------------------
  224-  234 (19.62/11.16)	RWLSSKSSSSA
  243-  253 (19.04/10.59)	KFLSQQSQTSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.05|      10|      19|     162|     176|       5
---------------------------------------------------------------------------
  162-  176 (17.56/19.18)	WS.PTSCPralliANF
  183-  193 (16.49/ 6.30)	WTqPSQGP.....ANL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     112.43|      21|      23|     322|     342|       6
---------------------------------------------------------------------------
  300-  325 (22.61/ 7.14)	PSGIMAADaiVTDSGAMHVagvPIVN
  326-  349 (34.35/14.69)	PSTIVVWE..VTPGPGPGFqatPKTS
  350-  366 (24.89/ 8.61)	ASTGVPPS..LNPPNWSGF.......
  892-  911 (30.58/12.27)	PSSFMPIS..INTGTFPGT...PAV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.49|      42|     421|      89|     131|       7
---------------------------------------------------------------------------
   89-  131 (74.18/54.64)	SVPEL..CRNFSAVTwCGKLNAIACASETCARIPSSNTNPPFWIP
  511-  554 (67.31/43.14)	SIPPTndFKTHQAVT.AGLISDARKTSDSGVEKAKSLTFDPFDLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.27|      19|      19|     746|     764|       8
---------------------------------------------------------------------------
  746-  764 (32.69/24.52)	LGKGIESALINPSNLVPEP
  766-  784 (32.58/24.41)	LASGETLSHIDPEAMAVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.23|      18|      19|     704|     722|       9
---------------------------------------------------------------------------
  704-  722 (28.78/25.48)	TQHRQQYGPSLDrIKCRLL
  725-  742 (29.45/20.17)	TNAQEVRAMVLD.MQARLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15608 with Med16 domain of Kingdom Viridiplantae
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