Description | Uncharacterized protein |
Sequence | MDNSSQSSGSQFRPVGPPHQGQPFIPVAPQQFRPVGQGIPAGQSQSLQFSQPMQQLPQWPNQPGHATPSSQGVPLPYVHPNRPLTAGPPQLQQTAPSAVPLSSPYTPQNNVSASSQFQPMPQMHAAAVPGGGQPWLAPGSNGVSVATAVQPTGQQPSVSSSSDAAVNVQQSSSDWQEHTASDGRRYYYNKRTKQSSWEKPFELMTAIERADASTVWKEFTTPEGKKYYYNKVTKQSKWSIPDELKLAREQAQQAYSQGTQSLADAASHAPAAVAVTMAETSTTATPVSSSSPGIFGVASSPLPVTPVVPVSNPAVVVSGSSALPVAQSNITNAAGAQPPVVNMTALPTGVSGSAGVTAASVNAKTASLSGLDNVSSQVAASSVDGVSMLDAEEVRKGTAVAGKSDPIPLEEKALDDEPLVFASKQEAKNAFKALLESANVQSDWTWEQTMREIINDKRYSALKTPGERKQAFNEYLGQRKKIEAEERRMRQKRARVEFTKMLEESKELTSSMKWSKAVSLFENDERFKAVEKTRDREDLFDNYIVELERKEREKAAEEHRRNVAEYKKFLESCDFIKVNSPWRKVQDRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEQQKKIQKEQLRRAERKNRDQFRKLLEDHVADGFLTAKTHWLDYCSKVKDLPQYHAVATNTSGSTPKDLFDDVAEELEKQYHDDKTRIKDALKTGKIMVSSTWTFEDFKAAISDDVSSPPISEINLKLLYDELLERAKEKEEKEAKKRQRLADDFTKLLYTYKEINASSSWDDCKHLFEESQEYRSIGEESFSREVFEEYVSHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDKEREREKGKERTKKDETDSENFDPTENYSHKEEKKREKDKERRHRRRHQSGTDDVSSDKDEKEESKKSRRHGSDRKKSRKHSRTPESDGESRHKRHKRDHRDGSRRNGGYEELEDGEVGEDGEIH |
Length | 984 |
Position | Unknown |
Organism | Manihot esculenta (Cassava) (Jatropha manihot) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot. |
Aromaticity | 0.07 |
Grand average of hydropathy | -1.089 |
Instability index | 58.49 |
Isoelectric point | 6.68 |
Molecular weight | 111465.26 |
Publications |
Annotated function |
|
GO - Cellular Component | |
GO - Biological Function | |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro |
Binary Interactions |
Repeats | >MDP15606 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 36.45| 15| 17| 828| 844| 1 --------------------------------------------------------------------------- 826- 842 (16.02/ 8.65) AKekERKREEEKAKKEK 861- 875 (20.43/ 6.36) ER..EREKGKERTKKDE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 89.02| 20| 20| 285| 304| 2 --------------------------------------------------------------------------- 86- 112 (20.84/ 8.51) AGPPqlqqtaPSAVP..LSSPyTPQ.....NN.VS 267- 288 (18.09/ 6.41) SHAP......AAVAVtmAETS.TTA.....TP.VS 289- 309 (30.83/16.15) SSSP......GIFGV..ASSP.LPV.....TPvVP 310- 334 (19.27/ 7.31) VSNP......AVVVS..GSSA.LPVaqsniTN.AA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 143.29| 37| 38| 175| 211| 3 --------------------------------------------------------------------------- 175- 211 (72.93/46.56) WQEHTASDGRRYYYNKRTKQSSWEKPFELMTAIERAD 216- 252 (70.36/44.65) WKEFTTPEGKKYYYNKVTKQSKWSIPDELKLAREQAQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 34.01| 13| 83| 757| 772| 4 --------------------------------------------------------------------------- 931- 943 (19.39/ 7.04) GSD..RKKSRKHSRT 945- 959 (14.62/ 9.90) ESDgeSRHKRHKRDH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 431.52| 65| 65| 486| 550| 5 --------------------------------------------------------------------------- 429- 495 (81.31/38.06) NAF.KALLE...SANVQSDWTWEQTMR......EIINDKRYSAL...KTPGERKQAFNEYLGQR....................KKI.......eaeERRM.RQ..KRAR 496- 563 (91.68/43.72) VEFTKMLEE...SKELTSSMKWSKAVS......LFENDERFKAV...EKTRDREDLFDNYIVEL....................ERK.......ereKAAE.EH..RRNV 564- 637 (79.72/37.19) AEYKKFLES...CDFIKVNSPWRKVQD......RLEDDERCLRL...EKL.DRLLIFQDYIRDL....................EKEeeqqkkiqkeQLRR.AE..RKNR 638- 714 (66.23/29.82) DQFRKLLEDhvaDGFLTAKTHWLDYCS......KVKDLPQYHAVatnTSGSTPKDLFDDVAEEL....................EKQ......yhddKTRI.KDalKTGK 717- 771 (46.05/18.80) VSSTWTFED...FKAAISDDVSSPPISeinlklLYD.....ELL...ERAKEKE........EK....................EAK..............kRQ..RLAD 772- 855 (66.53/29.98) .DFTKLLYT...YKEINASSSWDDCKH......LFEESQEYRSI..gEESFSRE.VFEEYVSHLqekakekerkreeekakkekERE..........EKEK.RK..EKER --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 111.92| 13| 19| 11| 23| 6 --------------------------------------------------------------------------- 11- 23 (30.96/18.67) QFRPVG...P.......PHQGQP 31- 46 (19.79/ 9.07) QFRPVGqgiP.......AGQSQS 48- 57 (18.62/ 8.06) QF...S...Q.......PMQQLP 71- 83 (22.06/11.02) QGVPLP...Y.......VHPNRP 116- 134 (20.49/ 9.67) QFQPM....PqmhaaavPGGGQP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.69| 16| 20| 341| 360| 7 --------------------------------------------------------------------------- 335- 352 (22.84/17.69) GAQPPVVNmtALPTGVSG 355- 370 (25.86/19.42) GVTAASVN..AKTASLSG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.74| 21| 30| 877| 897| 8 --------------------------------------------------------------------------- 877- 897 (36.80/21.41) DSENF..........DPTENYSHKEEKKREK 898- 928 (25.94/12.64) DKERRhrrrhqsgtdDVSSDKDEKEESKKSR --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GKKYYYNK 2) IPVAP 3) YEELED | 224 25 969 | 231 29 974 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab