<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15606

Description Uncharacterized protein
SequenceMDNSSQSSGSQFRPVGPPHQGQPFIPVAPQQFRPVGQGIPAGQSQSLQFSQPMQQLPQWPNQPGHATPSSQGVPLPYVHPNRPLTAGPPQLQQTAPSAVPLSSPYTPQNNVSASSQFQPMPQMHAAAVPGGGQPWLAPGSNGVSVATAVQPTGQQPSVSSSSDAAVNVQQSSSDWQEHTASDGRRYYYNKRTKQSSWEKPFELMTAIERADASTVWKEFTTPEGKKYYYNKVTKQSKWSIPDELKLAREQAQQAYSQGTQSLADAASHAPAAVAVTMAETSTTATPVSSSSPGIFGVASSPLPVTPVVPVSNPAVVVSGSSALPVAQSNITNAAGAQPPVVNMTALPTGVSGSAGVTAASVNAKTASLSGLDNVSSQVAASSVDGVSMLDAEEVRKGTAVAGKSDPIPLEEKALDDEPLVFASKQEAKNAFKALLESANVQSDWTWEQTMREIINDKRYSALKTPGERKQAFNEYLGQRKKIEAEERRMRQKRARVEFTKMLEESKELTSSMKWSKAVSLFENDERFKAVEKTRDREDLFDNYIVELERKEREKAAEEHRRNVAEYKKFLESCDFIKVNSPWRKVQDRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEQQKKIQKEQLRRAERKNRDQFRKLLEDHVADGFLTAKTHWLDYCSKVKDLPQYHAVATNTSGSTPKDLFDDVAEELEKQYHDDKTRIKDALKTGKIMVSSTWTFEDFKAAISDDVSSPPISEINLKLLYDELLERAKEKEEKEAKKRQRLADDFTKLLYTYKEINASSSWDDCKHLFEESQEYRSIGEESFSREVFEEYVSHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDKEREREKGKERTKKDETDSENFDPTENYSHKEEKKREKDKERRHRRRHQSGTDDVSSDKDEKEESKKSRRHGSDRKKSRKHSRTPESDGESRHKRHKRDHRDGSRRNGGYEELEDGEVGEDGEIH
Length984
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy-1.089
Instability index58.49
Isoelectric point6.68
Molecular weight111465.26
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15606
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.45|      15|      17|     828|     844|       1
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  826-  842 (16.02/ 8.65)	AKekERKREEEKAKKEK
  861-  875 (20.43/ 6.36)	ER..EREKGKERTKKDE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      89.02|      20|      20|     285|     304|       2
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   86-  112 (20.84/ 8.51)	AGPPqlqqtaPSAVP..LSSPyTPQ.....NN.VS
  267-  288 (18.09/ 6.41)	SHAP......AAVAVtmAETS.TTA.....TP.VS
  289-  309 (30.83/16.15)	SSSP......GIFGV..ASSP.LPV.....TPvVP
  310-  334 (19.27/ 7.31)	VSNP......AVVVS..GSSA.LPVaqsniTN.AA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.29|      37|      38|     175|     211|       3
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  175-  211 (72.93/46.56)	WQEHTASDGRRYYYNKRTKQSSWEKPFELMTAIERAD
  216-  252 (70.36/44.65)	WKEFTTPEGKKYYYNKVTKQSKWSIPDELKLAREQAQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.01|      13|      83|     757|     772|       4
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  931-  943 (19.39/ 7.04)	GSD..RKKSRKHSRT
  945-  959 (14.62/ 9.90)	ESDgeSRHKRHKRDH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     431.52|      65|      65|     486|     550|       5
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  429-  495 (81.31/38.06)	NAF.KALLE...SANVQSDWTWEQTMR......EIINDKRYSAL...KTPGERKQAFNEYLGQR....................KKI.......eaeERRM.RQ..KRAR
  496-  563 (91.68/43.72)	VEFTKMLEE...SKELTSSMKWSKAVS......LFENDERFKAV...EKTRDREDLFDNYIVEL....................ERK.......ereKAAE.EH..RRNV
  564-  637 (79.72/37.19)	AEYKKFLES...CDFIKVNSPWRKVQD......RLEDDERCLRL...EKL.DRLLIFQDYIRDL....................EKEeeqqkkiqkeQLRR.AE..RKNR
  638-  714 (66.23/29.82)	DQFRKLLEDhvaDGFLTAKTHWLDYCS......KVKDLPQYHAVatnTSGSTPKDLFDDVAEEL....................EKQ......yhddKTRI.KDalKTGK
  717-  771 (46.05/18.80)	VSSTWTFED...FKAAISDDVSSPPISeinlklLYD.....ELL...ERAKEKE........EK....................EAK..............kRQ..RLAD
  772-  855 (66.53/29.98)	.DFTKLLYT...YKEINASSSWDDCKH......LFEESQEYRSI..gEESFSRE.VFEEYVSHLqekakekerkreeekakkekERE..........EKEK.RK..EKER
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     111.92|      13|      19|      11|      23|       6
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   11-   23 (30.96/18.67)	QFRPVG...P.......PHQGQP
   31-   46 (19.79/ 9.07)	QFRPVGqgiP.......AGQSQS
   48-   57 (18.62/ 8.06)	QF...S...Q.......PMQQLP
   71-   83 (22.06/11.02)	QGVPLP...Y.......VHPNRP
  116-  134 (20.49/ 9.67)	QFQPM....PqmhaaavPGGGQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.69|      16|      20|     341|     360|       7
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  335-  352 (22.84/17.69)	GAQPPVVNmtALPTGVSG
  355-  370 (25.86/19.42)	GVTAASVN..AKTASLSG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.74|      21|      30|     877|     897|       8
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  877-  897 (36.80/21.41)	DSENF..........DPTENYSHKEEKKREK
  898-  928 (25.94/12.64)	DKERRhrrrhqsgtdDVSSDKDEKEESKKSR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15606 with Med35 domain of Kingdom Viridiplantae
Unable to open file!