Description | Uncharacterized protein |
Sequence | MDNSSQSSGSQFRPVGPPHQGQPFIPVAPQQFRPVGQGIPAGQSQSLQFSQPMQQLPQWPNQPGHATPSSQGVPLPYVHPNRPLTAGPPQLQQTAPSAVPLSSPYTFTPSSFGQPQNNVSASSQFQPMPQMHAAAVPGGGQPWLAPGSNGVSVATAVQPTGQQPSVSSSSDAAVNVQQSSSDWQEHTASDGRRYYYNKRTKQSSWEKPFELMTAIERADASTVWKEFTTPEGKKYYYNKVTKQSKWSIPDELKLAREQAQQAYSQGTQSLADAASHAPAAVAVTMAETSTTATPVSSSSPGIFGVASSPLPVTPVVPVSNPAVVVSGSSALPVAQSNITNAAGAQPPVVNMTALPTGVSGSAGVTAASVNAKTASLSGLDNVSSQVAASSVDGVSMLDAEEVRKGTAVAGKSDPIPLEEKALDDEPLVFASKQEAKNAFKALLESANVQSDWTWEQTMREIINDKRYSALKTPGERKQAFNEYLGQRKKIEAEERRMRQKRARVEFTKMLEESKELTSSMKWSKAVSLFENDERFKAVEKTRDREDLFDNYIVELERKEREKAAEEHRRNVAEYKKFLESCDFIKVNSPWRKVQDRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEQQKKIQKEQLRRAERKNRDQFRKLLEDHVADGFLTAKTHWLDYCSKVKDLPQYHAVATNTSGSTPKDLFDDVAEELEKQYHDDKTRIKDALKTGKIMVSSTWTFEDFKAAISDDVSSPPISEINLKLLYDELLERAKEKEEKEAKKRQRLADDFTKLLYTYKEINASSSWDDCKHLFEESQEYRSIGEESFSREVFEEYVSHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDKEREREKGKERTKKDETDSENFDPTENYSHKEEKKREKDKERRHRRRHQSGTDDVSSDKDEKEESKKSRRHGSDRKKSRKHSRTPESDGESRHKRHKRDHRDGSRRNGGYEELEDGEVGEDGEIH |
Length | 992 |
Position | Unknown |
Organism | Manihot esculenta (Cassava) (Jatropha manihot) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot. |
Aromaticity | 0.07 |
Grand average of hydropathy | -1.083 |
Instability index | 58.80 |
Isoelectric point | 6.68 |
Molecular weight | 112317.17 |
Publications |
Annotated function |
|
GO - Cellular Component | cytosol GO:0005829 IEA:EnsemblPlants mediator complex GO:0016592 IEA:EnsemblPlants U1 snRNP GO:0005685 IBA:GO_Central U2-type prespliceosome GO:0071004 IBA:GO_Central |
GO - Biological Function | RNA binding GO:0003723 IBA:GO_Central |
GO - Biological Process | mRNA cis splicing, via spliceosome GO:0045292 IEA:InterPro mRNA splicing, via spliceosome GO:0000398 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP15605 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 73.32| 19| 19| 835| 853| 1 --------------------------------------------------------------------------- 824- 842 (26.34/11.82) EEYVSHLQEKA...KEKERKRE 843- 861 (25.68/11.31) EEKAKKEKERE...EKEKRKEK 945- 966 (21.30/ 7.91) SRKHSRTPESDgesRHKRHKRD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 146.07| 38| 38| 183| 220| 2 --------------------------------------------------------------------------- 183- 220 (74.08/45.68) WQEHTASDGRRYYYNKRTKQSSWEKPFELMTAIERADA 224- 261 (71.99/44.17) WKEFTTPEGKKYYYNKVTKQSKWSIPDELKLAREQAQQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 6| 207.53| 36| 38| 55| 92| 3 --------------------------------------------------------------------------- 13- 40 (34.52/15.25) ......RPV......GP...P..........HqGQ..PF.IP..VAPQQFRP....VGQGIP. 41- 75 (39.08/18.33) ..............AGQ...SQ.slqfsqpMQ.QL..PQ.WP..NQPGHATP....SSQGVPL 76- 113 (41.50/26.34) PyvHPNRPLT....AGP...PQ........LQ.QT.aPSaVP.lSSPYTFTP....SSFG... 114- 153 (41.96/20.27) ...QPQNNVS....ASSqfqP.........MP.QMhaAA.VPggGQPWLA.P....GSNGVSV 294- 333 (29.32/11.73) .......PVS....SSS...PGifgvasspLP.VT..PV.VP.vSNPAVVVS....GSSALPV 334- 364 (21.15/ 6.76) A....QSNITnaagAQP...PV........VN...............MTALPtgvsGSAGV.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 5| 194.33| 38| 38| 862| 899| 4 --------------------------------------------------------------------------- 534- 571 (54.65/27.30) RFKAVEKTRDREDLFDNYIVEL.ERKER.....EKA....AEEHRRNV 572- 602 (30.12/11.85) AEYKKFLESCDFIKV.NSPWRKvQDRLE.....DDE....R....... 610- 646 (23.65/ 7.77) .........DRLLIFQDYIRDL.EKEEEqqkkiQKEqlrrAER.KNRD 878- 915 (56.02/28.16) RTKKDETDSENFDPTENYSHKEeKKREK.....DKE....R.RHRRRH 916- 941 (29.87/11.69) QSGTDDVSSD............kDEKEE.....SK.....KSRRHGSD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 339.81| 83| 274| 448| 531| 6 --------------------------------------------------------------------------- 448- 530 (138.63/91.71) VQSDW.....TWEQTMREIINDKRYSALKTPGE...RKQAFNEYLGQRKKIEAEERRMRQKRARVEFTKMLEESKELTSSMKWSKAVSLFE 656- 727 (81.46/46.63) VADGFltaktHWLDYCSKVKDLPQYHAVATNTSgstPKDLFDDV......AEELEKQYHDDKTRIK..DALKTGKIMVSS........... 729- 805 (119.72/76.57) ....W.....TFED.FKAAISDDVSSPPISEIN...LKLLYDELLERAKEKEEKEAKKRQRLAD.DFTKLLYTYKEINASSSWDDCKHLFE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 66.84| 18| 18| 377| 394| 7 --------------------------------------------------------------------------- 367- 387 (22.43/10.89) ASvnaKTASL....SGLD..NVSSQVA 388- 407 (23.55/11.77) AS...SVDGV....SMLDaeEVRKGTA 409- 429 (20.85/ 9.66) AG...KSDPIpleeKALD..D.EPLVF --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) IPVAP 2) YEELED | 25 977 | 29 982 |
© 2021 Shailesh Lab
Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab