<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15605

Description Uncharacterized protein
SequenceMDNSSQSSGSQFRPVGPPHQGQPFIPVAPQQFRPVGQGIPAGQSQSLQFSQPMQQLPQWPNQPGHATPSSQGVPLPYVHPNRPLTAGPPQLQQTAPSAVPLSSPYTFTPSSFGQPQNNVSASSQFQPMPQMHAAAVPGGGQPWLAPGSNGVSVATAVQPTGQQPSVSSSSDAAVNVQQSSSDWQEHTASDGRRYYYNKRTKQSSWEKPFELMTAIERADASTVWKEFTTPEGKKYYYNKVTKQSKWSIPDELKLAREQAQQAYSQGTQSLADAASHAPAAVAVTMAETSTTATPVSSSSPGIFGVASSPLPVTPVVPVSNPAVVVSGSSALPVAQSNITNAAGAQPPVVNMTALPTGVSGSAGVTAASVNAKTASLSGLDNVSSQVAASSVDGVSMLDAEEVRKGTAVAGKSDPIPLEEKALDDEPLVFASKQEAKNAFKALLESANVQSDWTWEQTMREIINDKRYSALKTPGERKQAFNEYLGQRKKIEAEERRMRQKRARVEFTKMLEESKELTSSMKWSKAVSLFENDERFKAVEKTRDREDLFDNYIVELERKEREKAAEEHRRNVAEYKKFLESCDFIKVNSPWRKVQDRLEDDERCLRLEKLDRLLIFQDYIRDLEKEEEQQKKIQKEQLRRAERKNRDQFRKLLEDHVADGFLTAKTHWLDYCSKVKDLPQYHAVATNTSGSTPKDLFDDVAEELEKQYHDDKTRIKDALKTGKIMVSSTWTFEDFKAAISDDVSSPPISEINLKLLYDELLERAKEKEEKEAKKRQRLADDFTKLLYTYKEINASSSWDDCKHLFEESQEYRSIGEESFSREVFEEYVSHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDKEREREKGKERTKKDETDSENFDPTENYSHKEEKKREKDKERRHRRRHQSGTDDVSSDKDEKEESKKSRRHGSDRKKSRKHSRTPESDGESRHKRHKRDHRDGSRRNGGYEELEDGEVGEDGEIH
Length992
PositionUnknown
OrganismManihot esculenta (Cassava) (Jatropha manihot)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Manihoteae> Manihot.
Aromaticity0.07
Grand average of hydropathy-1.083
Instability index58.80
Isoelectric point6.68
Molecular weight112317.17
Publications









Function






Annotated function


GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15605
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.32|      19|      19|     835|     853|       1
---------------------------------------------------------------------------
  824-  842 (26.34/11.82)	EEYVSHLQEKA...KEKERKRE
  843-  861 (25.68/11.31)	EEKAKKEKERE...EKEKRKEK
  945-  966 (21.30/ 7.91)	SRKHSRTPESDgesRHKRHKRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.07|      38|      38|     183|     220|       2
---------------------------------------------------------------------------
  183-  220 (74.08/45.68)	WQEHTASDGRRYYYNKRTKQSSWEKPFELMTAIERADA
  224-  261 (71.99/44.17)	WKEFTTPEGKKYYYNKVTKQSKWSIPDELKLAREQAQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     207.53|      36|      38|      55|      92|       3
---------------------------------------------------------------------------
   13-   40 (34.52/15.25)	......RPV......GP...P..........HqGQ..PF.IP..VAPQQFRP....VGQGIP.
   41-   75 (39.08/18.33)	..............AGQ...SQ.slqfsqpMQ.QL..PQ.WP..NQPGHATP....SSQGVPL
   76-  113 (41.50/26.34)	PyvHPNRPLT....AGP...PQ........LQ.QT.aPSaVP.lSSPYTFTP....SSFG...
  114-  153 (41.96/20.27)	...QPQNNVS....ASSqfqP.........MP.QMhaAA.VPggGQPWLA.P....GSNGVSV
  294-  333 (29.32/11.73)	.......PVS....SSS...PGifgvasspLP.VT..PV.VP.vSNPAVVVS....GSSALPV
  334-  364 (21.15/ 6.76)	A....QSNITnaagAQP...PV........VN...............MTALPtgvsGSAGV..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     194.33|      38|      38|     862|     899|       4
---------------------------------------------------------------------------
  534-  571 (54.65/27.30)	RFKAVEKTRDREDLFDNYIVEL.ERKER.....EKA....AEEHRRNV
  572-  602 (30.12/11.85)	AEYKKFLESCDFIKV.NSPWRKvQDRLE.....DDE....R.......
  610-  646 (23.65/ 7.77)	.........DRLLIFQDYIRDL.EKEEEqqkkiQKEqlrrAER.KNRD
  878-  915 (56.02/28.16)	RTKKDETDSENFDPTENYSHKEeKKREK.....DKE....R.RHRRRH
  916-  941 (29.87/11.69)	QSGTDDVSSD............kDEKEE.....SK.....KSRRHGSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     339.81|      83|     274|     448|     531|       6
---------------------------------------------------------------------------
  448-  530 (138.63/91.71)	VQSDW.....TWEQTMREIINDKRYSALKTPGE...RKQAFNEYLGQRKKIEAEERRMRQKRARVEFTKMLEESKELTSSMKWSKAVSLFE
  656-  727 (81.46/46.63)	VADGFltaktHWLDYCSKVKDLPQYHAVATNTSgstPKDLFDDV......AEELEKQYHDDKTRIK..DALKTGKIMVSS...........
  729-  805 (119.72/76.57)	....W.....TFED.FKAAISDDVSSPPISEIN...LKLLYDELLERAKEKEEKEAKKRQRLAD.DFTKLLYTYKEINASSSWDDCKHLFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.84|      18|      18|     377|     394|       7
---------------------------------------------------------------------------
  367-  387 (22.43/10.89)	ASvnaKTASL....SGLD..NVSSQVA
  388-  407 (23.55/11.77)	AS...SVDGV....SMLDaeEVRKGTA
  409-  429 (20.85/ 9.66)	AG...KSDPIpleeKALD..D.EPLVF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15605 with Med35 domain of Kingdom Viridiplantae
Unable to open file!