<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15592

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMASEPSTRQKLHSILDDMELISKELIEQLAIPKSQRKTEAPDMPDATDLMDVLIEKDGELKDLLKTAEEQEKVEKVIDGLRQEVNKRDGEIRQLQRVLKEAETIMATAVYQAKQKLAAIRQAQQNKVPSEDLIKYAHRISASNAVSAPPTWGPGDPRRPYPTDLEMRHSCLSMGPYSDSSSSVSTPQVRLYSQESQSSHPHQHHPLTPQQQQSLGLHHHQQPHHQQPGMLPAYSWQPSQEGLMSMPSHHSVVESLRGHSKEEDDVELMSSDSSSSSSSDE
Length280
PositionMiddle
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.03
Grand average of hydropathy-0.889
Instability index71.72
Isoelectric point5.58
Molecular weight31398.62
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364141

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15592
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.25|      17|      21|     185|     205|       1
---------------------------------------------------------------------------
  185-  205 (31.43/24.61)	TPQvrlySQESQSSHPHQ..HH..P
  207-  227 (27.82/12.73)	TPQ....QQQSLGLHHHQqpHHqqP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.42|      21|      26|     230|     250|       2
---------------------------------------------------------------------------
  230-  250 (41.30/22.30)	LPAYSWQPSQEGLMSMPSHHS
  255-  275 (35.12/17.95)	LRGHSKEEDDVELMSSDSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.78|      24|      28|      50|      73|       3
---------------------------------------------------------------------------
   50-   73 (38.95/31.50)	MDVL...IEK.DGELKDLLKTAEEQEKV
   77-  104 (29.83/22.55)	IDGLrqeVNKrDGEIRQLQRVLKEAETI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15592 with Med4 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NAVSAPPTWGPGDPRRPYPTDLEMRHSCLSMGPYSDS
2) SSVSTPQVRLYSQESQSSHPHQHHPLTPQQQQSLGLHHHQQPHHQQPGMLPAYSWQPSQEGLMSMPSHHSVVESLRGHSKEEDDVELMSSDSSSSSSSDE
143
181
179
280










Molecular Recognition Features






MoRF SequenceStartStop




1) DLIKYAHRISA
2) MLPAYSWQ
3) RQKLHSILDDMELISKELIEQLAIPKSQRK
4) SKEEDDVELMS
5) TDLMDVLIE
131
229
8
259
47
141
236
37
269
55