<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15589

Description Uncharacterized protein
SequenceMSIQIKKEPTGSGISSGLLDIKKEPGSSSQNASNTRAVLVSKIKMNLMQAWRERWTEIQWAIQLKKLMAAYCTENVDVAEILMQQALVGSSPNSLILSYLKHGVLSQMIPYHTVLKYITEFDDFSRPYCILALLHLAEMFGSKISLSPCQDSPLQLVRTILSLIHWQVKALYICLQRIQENKSTVAAEYFVIMDNASRAIINILDRKAVRSLMQIAKTDSPDAYREFEQCEMNVGGTISQLPSNSQLGDTREKINSALLQLSKLNDMSPSFEPVLEITNSPICPTINSLVVLEAILNSSSDIQPFVDQVLVVSRLMKLPMPQLCLEIFRVCFMGFVDTNDFSEDLQWATFAFLKVPHILNAIKEKMPDWDMSSHVERGLDMLLEFSHLLDQTDIKQNFDMLVQFITELQKANIITESQKTSLCMKRSEQRSRLRPSDISGSNEGKNLSRVTHAEATVTSILKGSATLDRMLKSLDSDPHRNSESMIKVLTIMLQGHSFDILRLAAASTGRLHDFMSKLIRINELASQTTSESLKIPNRNQLFDVTFLMIISIFQQNGLGIALSNKENEYALVVQWAKRWLPEEGKYKNVEFIEEQDKVDAILNLMLSSAEIIPCGQIASWKEMIMYLPYALQEILFAVEHMALNLEKVKMIIDHIRKQNIKSLLLVCTTYLCSYMNIVGAAARVKPLKMLEFFTISLGIDTKQPIQAIIDNIIYDILPEGHPQRPIRRYQLSSKKLTSEIMNETLKDSFHRGWLNMASLHTLEQLLVLRGPDWFCAEMVEHLLKQNHTDDATQSLSLAFAIMHMDLERMTISLLRRVLPSLLTTPQNSLLTDPRGYCLAKLCVLSITATHMSKIGQKEPYVRRRHKRLITEVDMDDDFDDGDTPPAKLRKLSEPQLSLSMEDFNLAALADKEDGEVLPSLDMKDPLNKALVNLFQLMNTILMNKTLSSRTWFIVSIIQEAIKCGGTHSSFIFQFMPQNMLNQVMRSLPGVFSDEHILRICDLSTLSGRKMAAKAICNNAQIPQLNLFD
Length1028
PositionTail
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.07
Grand average of hydropathy-0.056
Instability index50.28
Isoelectric point6.40
Molecular weight116506.39
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15589
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.13|      10|      15|       3|      12|       1
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    3-   12 (18.69/11.47)	IQIKKEPTGS
   19-   28 (18.44/11.22)	LDIKKEPGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.12|      16|      16|     379|     394|       2
---------------------------------------------------------------------------
  379-  394 (27.63/14.50)	LDMLLEFSHLLDQTDI
  398-  413 (27.49/14.39)	FDMLVQFITELQKANI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.76|      23|     402|     347|     374|       3
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  347-  374 (35.98/36.37)	WATFAFLkvpHILNA...IKEkmPDW...DMSSH
  753-  781 (35.78/20.87)	WLNMASL...HTLEQllvLRG..PDWfcaEMVEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.86|      14|      16|      96|     111|       4
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   96-  111 (20.85/21.12)	ILSYL.KHGVLSQmiPY
  114-  128 (22.00/13.68)	VLKYItEFDDFSR..PY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     254.63|      81|     567|     212|     340|       7
---------------------------------------------------------------------------
  241-  331 (115.52/165.24)	LPSnsqLgDTREKINSALLQLSKLndMSpsfEPVLEITNSPICPTINSlVVLEAIL...NSSSDIQPFVDQVLVVSRLMKLPMPQLCLEIFRVC
  917- 1000 (139.11/77.97)	LPS...L.DMKDPLNKALVNLFQL..MN...TILMNKTLSSRTWFIVS.IIQEAIKcggTHSSFIFQFMPQNMLNQVMRSLPGVFSDEHILRIC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15589 with Med24 domain of Kingdom Metazoa
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