<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15588

Description Uncharacterized protein
SequenceMSIQIKKEPTGSGISSGLLDIKKEPGSSSQNASNTRAVLVSKIKMNLMQAWRERWTEIQWAIQLKKLMAAYCTENVDVAEILMQQALVGSSPNSLILSYLKHGVLSQMIPYHTVLKYITEFDDFSRPYCILALLHLAEMFGSKISLSPCQDSPLQLVRTILSLIHWQVKALYICLQRIQENKSTVAAEYFVIMDNASRAIINILDRKAVRSLMQIAKTDSPDAYREFEQCEMNVGGTISQLPSNSQLGDTREKINSALLQLSKLNDMSPSFEPVLEITNSPICPTINSLVVLEAILNSSSDIQPFVDQVLVVSRLMKLPMPQLCLEIFRVCFMGFVDTNDFSEDLQWATFAFLKVPHILNAIKEKMPDWDMSSHVERGLDMLLEFSHLLDQTDIKQNFDMLVQFITELQKANIITESQKTSLCMKRSEQRSRLRPSDISGSNEGKNLSRVTHAEATVTSILKSLDSDPHRNSESMIKVLTIMLQGHSFDILRLAAASTGRLHDFMSKLIRINELASQTTSESLKIPNRNQLFDVTFLMIISIFQQNGLGIALSNKENEYALVVQWAKRWLPEEGKYKNVEFIEEQDKVDAILNLMLSSAEIIPCGQIASWKEMIMYLPYALQEILFAVEHMALNLEKVKMIIDHIRKQNIKSLLLVCTTYLCSYMNIVGAAARVKPLKMLEFFTISLGIDTKQPIQAIIDNIIYDILPEGHPQRPIRRYQLSSKKLTSEIMNETLKDSFHRGWLNMASLHTLEQLLVLRGPDWFCAEMVEHLLKQNHTDDATQSLSLAFAIMHMDLERMTISLLRRVLPSLLTTPQNSLLTDPRGYCLAKLCVLSITATHMSKIGQKEPYVRRRHKRLITEVDMDDDFDDGDTPPAKLRKLSEPQLSLSMEDFNLAALADKEDGEVLPSLDMKDPLNKALVNLFQLMNTILMNKTLSSRTWFIVSIIQEAIKCGGTHSSFIFQFMPQNMLNQVMRSLPGVFSDEHILRICDLSTLSGRKMAAKAICNNAQIPQLNLFD
Length1018
PositionTail
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.07
Grand average of hydropathy-0.055
Instability index50.91
Isoelectric point6.32
Molecular weight115433.12
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15588
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.13|      10|      15|       3|      12|       1
---------------------------------------------------------------------------
    3-   12 (18.69/12.64)	IQIKKEPTGS
   19-   28 (18.44/12.37)	LDIKKEPGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.12|      16|      16|     379|     394|       2
---------------------------------------------------------------------------
  379-  394 (27.63/16.30)	LDMLLEFSHLLDQTDI
  398-  413 (27.49/16.17)	FDMLVQFITELQKANI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.86|      14|      16|      96|     111|       3
---------------------------------------------------------------------------
   96-  111 (20.85/19.81)	ILSYL.KHGVLSQmiPY
  114-  128 (22.00/12.90)	VLKYItEFDDFSR..PY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.14|      27|     352|     314|     340|       4
---------------------------------------------------------------------------
  314-  340 (51.06/35.44)	RLMKLPMPQLCLEIFRVCFMGFVDTND
  877-  903 (44.08/29.54)	KLRKLSEPQLSLSMEDFNLAALADKED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.70|      14|      17|     274|     287|       5
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  274-  287 (27.25/15.87)	VLE.ITN..SPICPTIN
  291-  307 (16.45/ 6.86)	VLEaILNssSDIQPFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.38|      51|     175|     735|     792|       6
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  735-  792 (80.78/53.26)	LKDSFHRGWLNMasLHTLEQLLV...LRGPDWFCAEMVEHLLKQNHTDDatqslSLAFAIM
  912-  965 (83.60/42.14)	MKDPLNKALVNL..FQLMNTILMnktLSSRTWFIVSIIQEAIKCGGTHS.....SFIFQFM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15588 with Med24 domain of Kingdom Metazoa
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