<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15580

Description Uncharacterized protein
SequenceMVATSNQLNNQLEEDPVYDVVIVVEKTANLVPYLDELKTAYLIPTLEHFNGGPPSPIDTGHDYNCTLYCLVTYTAGDTAPEMASECFFPTTSTHEFLQTFDNLQFIGGAGQSCSHVSEGLSTALQCLDEIKQLRYSGKPTQRHCILICNSPPYHITAEESQDYRGYNSEQLASMMGKRGVNLSIISPRKIPALQKLFNEACAGDNFHNVPQAHYAVDPRHLVLLKGFQLQERSISPKFDEKKLLLNVPSPLMTEPLKAVESNFKKPPTNQTGLQQPSPQHVAHVIQPNVNPISQTSTLPMGMQQPIPQSKAQVSSTMTVQGNMQQRLRQQQPQQQDPNLMMRQPMSSTSGPTGMINVQQSGPLMSQHMSQQGMNQQGMMVSQGPSNMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQNMGMIGQSMQTQPMMQPVGSQNQGMMQSNNAQNQGSMMSSGGIPSPGMLQGVGQNTGMMQSSGSQNSGMLHSSNSQNSGNMMQNPNSGMMQNPNSGLMQQGTGVGNLQQQSQMQQQSQMQQSQMQQQQSQMQQQQSQIQQQQQSQIQQQTQIQQQSQQSQVSSSQNLFPFGQQGIQPGFISDVSGQNPLANVGQLPMVPGPTDRRIIWSGTMEYQDRNVQPNNQRSVTFLLNCNVSVDVQDMDISTADWPQKLNIQLLPQPMLAGLQQLCKNSRQVFFHFPNNNANQNPSALQNLYTLMGHGFAGCVRFPPQSDTKIILLMYSAKKKSFIGLIPNDQMGIVQGIKTVVARYRQKQQQQVNAMAGVNAGNSGQGMANQVMAQGPNNAAVPIGGTGMMQSQMPIAVNTAQQQVSQQSQQQTQQPPPQQQQQQQQQQQQQSQLQQTGSAAARQTNLMIQSLPNDLQPGKSREMPFQQQPGPGIDQKKMILQQQQQQQQQVQQQQMMNDGHMYYPGHHHYLYHAHRAKLQQQQLQRMQMQQQQQQQMTNPQLRHLLINTQQQQQLRQQQQQQQLMLQQQQQQQMRGGNPQAQQGLVMGQQGMQGGGMGQMAPQSGQNFMDDFSSIGEIM
Length1044
PositionUnknown
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.04
Grand average of hydropathy-0.759
Instability index67.76
Isoelectric point8.37
Molecular weight115870.35
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15580
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     508.52|      63|      63|     361|     423|       1
---------------------------------------------------------------------------
  306-  359 (60.22/ 9.14)	IPQskaqV.SSTMT...VQ.G....NMQQRLRQQ..QP....Q..Q........QDPNLMMRQPMSSTSGPT....GMIN.VQQ
  361-  423 (125.74/30.45)	GPL....M.SQHMS...QQ.GM...NQQGMMVSQ..GP....S..NMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQN.MGM
  425-  488 (84.32/16.98)	GQS....MqTQPMM...QPvGS...QNQGMMQSN..NA....Q..NQGSMMSSGGIPSPGMLQGVG.QNTGMMQSSGSQN.SGM
  532-  570 (56.29/ 7.86)	............MQ...QQ.SQ...MQQ....................SQMQ..QQQSQMQQQ..QSQ.IQQQQQSQIQQ.QTQ
  575-  625 (51.22/ 6.22)	SQ.....Q.SQVSS...SQ.NLfpfGQQGIQ......P.......GFISDVSG.QNPLAN....VG..QLPMVPGPTDRR.I..
  873-  938 (56.77/ 8.02)	.......M.IQSLPndlQP.GK...SRE.MPFQQqpGPgidqK..KMILQQQQQQQQQVQQQQMM...NDGHMYYPGHHHyLYH
  942- 1002 (73.95/13.61)	AKL....Q.QQQLQ...RM.QM...QQQQQQQMT..NP....QlrHLLINTQQQQQLRQQQQQ....QQLMLQQQQQQQM.RGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.39|      17|      20|     824|     840|       2
---------------------------------------------------------------------------
  824-  840 (30.42/ 8.53)	NTAQQQVSQQSQQQTQQ
  845-  861 (30.97/ 8.85)	QQQQQQQQQQQQSQLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.49|      22|      26|     248|     273|       3
---------------------------------------------------------------------------
  248-  273 (30.66/22.90)	PSPLMTEPLkaVESNFKkpPTNQT.....GL
  276-  302 (35.82/15.50)	PSPQHVAHV..IQPNVN..PISQTstlpmGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     242.94|      37|     294|     493|     529|       4
---------------------------------------------------------------------------
  493-  529 (68.82/26.28)	NSQNSGNMMQNPNSGM............MQNPNSGLMQQGTGVGNLQQQ
  641-  688 (42.25/13.13)	NNQRSVTFLLNCNVSVdvqdmdistadwPQKLNIQLLPQPMLAG.LQQL
  701-  731 (48.34/16.15)	N..NNAN..QNPSA..............LQNLYTLMGHGFAGCVRFPPQ
  741-  772 (40.00/12.02)	YSAKKKSFI.....GL............IPNDQMGIVQGIKTVVARYRQ
  788-  818 (43.53/13.76)	...NSGQGM..ANQVM............AQGPNNAAVPIG.GTGMMQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.84|      33|      59|      46|      78|       5
---------------------------------------------------------------------------
   46-   78 (62.92/37.65)	LEHFNGGPPSPIDTGHDYNCTLYCL.....VTYTAGDT
  103-  140 (51.91/29.76)	LQFIGGAGQSCSHVSEGLSTALQCLdeikqLRYSGKPT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15580 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQNPLANVGQLPMVPGPTDRRIIWSGTMEYQ
2) PLKAVESNFKKPPTNQTGLQQPSPQHVAHVIQPNVNPISQTSTLPMGMQQPIPQSKAQVSSTMTVQGNMQQRLRQQQPQQQDPNLMMRQPMSSTSGPTGMINVQQSGPLMSQHMSQQGMNQQGMMVSQGPSNMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQNMGMIGQSMQTQPMMQPVGSQNQGMMQSNNAQNQGSMMSSGGIPSPGMLQGVGQNTGMMQSSGSQNSGMLHSSNSQNSGNMMQNPNSGMMQNPNSGLMQQGTGVGNLQQQSQMQQQSQMQQSQMQQQQSQMQQQQSQIQQQQQSQIQQQTQIQQQSQQSQVSSSQNLF
3) QQQQQQQLMLQQQQQQQMRGGNPQAQQGLVMGQQGMQGGGMGQMAPQSGQNFMDDFSSIGEIM
4) QVNAMAGVNAGNSGQGMANQVMAQGPNNAAVPIGGTGMMQSQMPIAVNTAQQQVSQQSQQQTQQPPPQQQQQQQQQQQQQSQLQQTGSAAARQTNLMIQSLPNDLQPGKSREMPFQQQPGPGIDQKKMILQQQQQQQQQVQQQQMMNDGHMYYPGHHHYLYHAHRAKLQQQQLQRMQMQQQQQQQMTNPQLRHLLINTQQQQQ
604
255
982
777
634
587
1044
979










Molecular Recognition Features






MoRF SequenceStartStop




1) FMDDFSSI
1033
1040