<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15579

Description Uncharacterized protein
SequenceMVATSNQLNNQLEEDPVYDVVIVVEKTANLVPYLDELKTAYLIPTLEHFNGGPPSPIDTGHDYNCTLYCLVTYTAGDTAPEMASECFFPTTSTHEFLQTFDNLQFIGGAGQSCSHVSEGLSTALQCLDEIKQLRYSGKPTQRHCILICNSPPYHITAEESQDYRGYNSEQLASMMGKRGVNLSIISPRKIPALQKLFNEACAGDNFHNVPQAHYAVDPRHLVLLKGFQLQERSISPKFDEKKLLLNVPSPLMTEPLKAVESNFKKPPTNQTGLQQPSPQHVAHVIQPNVNPISQTSTLPMGMQQVTSPQSSVANTGNLAASMDLMGIPMGPGLSKQPMMVQMRPQPIPQSKAQVSSTMTVQGNMQQRLRQQQPQQQDPNLMMRQPMSSTSGPTGMINVQQSGPLMSQHMSQQGMNQQGMMVSQGPSNMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQNMGMIGQSMQTQPMMQPVGSQNQGMMQSNNAQNQGSMMSSGGIPSPGMLQGVGQNTGMMQSSGSQNSGMLHSSNSQNSGNMMQNPNSGMMQNPNSGLMQQGTGVGNLQQQSQMQQQSQMQQSQMQQQQSQMQQQQSQIQQQQQSQIQQQTQIQQQSQQSQVSSSQNLFPFGQQGIQPGFISDVSGQNPLANVGQLPMVPGPTDRRIIWSGTMEYQDRNVQPNNQRSVTFLLNCNVSVDVQDMDISTADWPQKLNIQLLPQPMLAGLQQLCKNSRQVFFHFPNNNANQNPSALQNLYTLMGHGFAGCVRFPPQSDTKIILLMYSAKKKSFIGLIPNDQMGIVQGIKTVVARYRQKQQQQVNAMAGVNAGNSGQGMANQVMAQGPNNAAVPIGGTGMMQSQMPIAVNTAQQQVSQQSQQQTQQPPPQQQQQQQQQQQQQSQLQQTGSAAARQTNLMIQSLPNDLQPGKSREMPFQQQPGPGIDQKKMILQQQQQQQQQVQQQQMMNDGHMYYPGHHHYLYHAHRAKLQQQQLQRMQMQQQQQQQMTNPQLRHLLINTQQQQQLRQQQQQQQLMLQQQQQQQMRGGNPQAQQGLVMGQQGMQGGGMGQMAPQSGQNFMDDFSSIGEIM
Length1085
PositionUnknown
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.04
Grand average of hydropathy-0.732
Instability index66.77
Isoelectric point8.50
Molecular weight120112.33
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15579
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     585.52|      62|      62|     885|     946|       1
---------------------------------------------------------------------------
  361-  429 (60.28/ 9.21)	QGNMQ.QRLR...QQQPQ..QQ.......DPNL..........MMRQPMsstsgptgminvqqsgpLMSQHMS.....QQG....MNQQgMMV...SQ..................GP........SN.MM
  436-  519 (55.13/ 7.68)	QNPSA.MQQQvvgSQNVSTMPQ.......PGT.............QNMG.................MIGQSMQTQpmMQPV....GSQN.QGM...MQSnnaqnqgsmmssggiP.SPgmlqGVGQNTgMM
  520-  566 (57.52/ 8.39)	QSSGS.QNSG...MLHSSNSQN.......SGN...................................MMQN.PNSgmMQNP....NSGL.M.....QQG...............T.GV....G.......N
  569-  598 (51.53/ 6.60)	QQSQM.QQQS...QMQQSQMQQ.......QQS..........................................Q..M..................QQQ...............Q.SQ............I
  599-  667 (66.36/11.03)	QQQQQ.SQIQ...QQTQIQQQS.......QQSQ..........VSSSQN.................LFPFG.QQG..IQPGfisdVSGQ.NPLanvGQL...............PmVP....GPTDRR.II
  812-  861 (61.98/ 9.72)	RQKQQ.QQVN...AMAGVNAGN.......SGQG..........MANQ...................VMAQG.PNN............AA.VPI.....................G.GT....GMMQSQ.MP
  885-  946 (116.38/25.94)	QQQQQ.QQQQ...QQQQSQLQQ.......TGSA..........AARQTN.................LMIQSLPND..LQPG....KSRE.MPF...QQQ...............P.GP....GIDQKK.MI
  947- 1011 (60.06/ 9.15)	LQQQQ.QQQQ...QVQQQQMMN.......DGHMyypghhhylyHAHRAK.................LQQQQL...............QR.MQM...QQQ..........qqqqmT.NP.......QLR.HL
 1016- 1069 (56.29/ 8.02)	QQQQQlRQQQ...QQQQLMLQQqqqqqmrGGNP..........QAQQGL.................VMGQ...QG..MQGG....GMGQ.MAP...Q..................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.63|      21|      27|     259|     279|       2
---------------------------------------------------------------------------
  245-  271 (23.58/ 7.67)	.LNV.PSPlmteplkA..........VESNFKKPPTNQT
  272-  295 (30.80/12.80)	GLQQ.PSP.......Q.....hvahvIQPNVN..PISQT
  301-  331 (24.26/ 8.16)	GMQQvTSP.......QssvantgnlaASMDLMGIPMG.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.31|      12|     381|     336|     347|       4
---------------------------------------------------------------------------
  336-  347 (24.88/11.57)	QPMMVQMRPQPI
  711-  722 (22.43/ 9.58)	QKLNIQLLPQPM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15579 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQNPLANVGQLPMVPGPTDRRIIWSGTMEYQ
2) PLKAVESNFKKPPTNQTGLQQPSPQHVAHVIQPNVNPISQTSTLPMGMQQVTSPQSSVANTGNLAASMDLMGIPMGPGLSKQPMMVQMRPQPIPQSKAQVSSTMTVQGNMQQRLRQQQPQQQDPNLMMRQPMSSTSGPTGMINVQQSGPLMSQHMSQQGMNQQGMMVSQGPSNMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQNMGMIGQSMQTQPMMQPVGSQNQGMMQSNNAQNQGSMMSSGGIPSPGMLQGVGQNTGMMQSSGSQNSGMLHSSNSQNSGNMMQNPNSGMMQNPNSGLMQQGTGVGNLQQQSQMQQQSQMQQSQMQQQQSQMQQQQSQIQQQQQSQIQQQTQIQQQSQQSQVSSSQNLF
3) QQQQQQQLMLQQQQQQQMRGGNPQAQQGLVMGQQGMQGGGMGQMAPQSGQNFMDDFSSIGEIM
4) QVNAMAGVNAGNSGQGMANQVMAQGPNNAAVPIGGTGMMQSQMPIAVNTAQQQVSQQSQQQTQQPPPQQQQQQQQQQQQQSQLQQTGSAAARQTNLMIQSLPNDLQPGKSREMPFQQQPGPGIDQKKMILQQQQQQQQQVQQQQMMNDGHMYYPGHHHYLYHAHRAKLQQQQLQRMQMQQQQQQQMTNPQLRHLLINTQQQQQ
645
255
1023
818
675
628
1085
1020










Molecular Recognition Features






MoRF SequenceStartStop




1) FMDDFSS
1074
1080