<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15578

Description Uncharacterized protein
SequenceMVATSNQLNNQLEEDPVYDVVIVVEKTANLVPYLDELKTAYLIPTLEHFNGGPPSPIDTGHDYNCTLYCLVTYTAGDTAPEMASECFFPTTSTHEFLQTFDNLQFIGGAGQSCSHVSEGLSTALQCLDEIKQLRYSGKPTQRHCILICNSPPYHITAEESQDYRGYNSEQLASMMGKRGVNLSIISPRKIPALQKLFNEACAGDNFHNVPQAHYAVDPRHLVLLKGFQLQERSISPKFDEKKLLLNVPSPLMTEPLKAVESNFKKPPTNQTGLQQPSPQHVAHVIQPNVNPISQTSTLPMGMQQVTSPQSSVANTGNLAASMDLMGIPMGPGLSKQPMMVQMRPQPIPQSKAQVSSTMTVQGNMQQRLRQQQPQQQDPNLMMRQPMSSTSGPTGMINVQQSGPLMSQHMSQQGMNQQGMMVSQGPSNMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQNMGMIGQSMQTQPMMQPVGSQNQGMMQSNNAQNQGSMMSSGGIPSPGMLQGVGQNTGMMQSSGSQNSGMLHSSNSQNSGNMMQNPNSGMMQNPNSGLMQQGTGVGNLQQQSQMQQQSQMQQSQMQQQQSQMQQQQSQIQQQQQSQIQQQTQIQQQSQQSQVSSSQNLFPFGQQGIQPGFISDVSGQNPLANVGQLPMVPGPTDRRIIWSGTMEYQDRNVQPNNQRSVTFLLNCNVSVDVQDMDISTADWPQKLNIQLLPQPMLAGLQQLCKNSRQVFFHFPNNNANQNPSALQNLYTLMGHGFAGCVRFPPQSDTKIILLMYSAKKKSFIGLIPNDQMGIVQGIKTVVARYRQKQQQVNAMAGVNAGNSGQGMANQVMAQGPNNAAVPIGGTGMMQSQMPIAVNTAQQQVSQQSQQQTQQPPPQQQQQQQQQQQQQSQLQQTGSAAARQTNLMIQSLPNDLQPGKSREMPFQQQPGPGIDQKKMILQQQQQQQQQVQQQQMMNDGHMYYPGHHHYLYHAHRAKLQQQQLQRMQMQQQQQQQMTNPQLRHLLINTQQQQQLRQQQQQQQLMLQQQQQQQMRGGNPQAQQGLVMGQQGMQGGGMGQMAPQSGQNFMDDFSSIGEIM
Length1084
PositionUnknown
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.04
Grand average of hydropathy-0.730
Instability index66.64
Isoelectric point8.50
Molecular weight119984.20
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15578
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     497.33|      59|      61|     845|     903|       2
---------------------------------------------------------------------------
  268-  328 (59.90/10.29)	TNQT....GLQQPSPQHVAHVI..QPNVNPISQTSTLPMG.................M..............QQV...TSPQSSVANTG.........nlaasmdlMGIP
  329-  392 (65.59/12.32)	MGPGlskqPMMVQMRPQPIPQS..KAQVSSTMTVQGNMQQ.................R...L.....RQQQPQQQ...DPNLMMRQPMS................sTSGP
  393-  479 (51.36/ 7.23)	TGMI....NVQQSGPLMSQHMS..QQGMNQQGMMVSQGPS.........nmmahmqgP...Q.....NPSAMQQQvvgSQNVSTMPQPGtqnmgmigqsmqtqpmmQPVG
  480-  535 (58.17/ 9.67)	SQNQ....GMMQS......NNA..QNQGSMMSSGGIPSPG.................M...L.....QGVGQNTG...MMQSSGSQNSG..............mlhSSNS
  536-  600 (48.64/ 6.26)	QNSG....NMMQN..P...NSGmmQNPNSGLMQQGTGVGNlqqqsqmqqqsqmqqsqM...Q.....QQQSQMQQ...QQ..SQIQQ.......................
  849-  907 (96.85/23.51)	IGGT....GMMQSQMPIAVNTA..QQQVSQQSQQQTQQPP.................P...Q.....QQQQQQQQ...QQQQSQLQQTG................sAAA.
  908-  970 (67.14/12.88)	.RQT....NLMIQSLP...NDL..QPGKSREMPFQ.QQPG.................PgidQkkmilQQQQQQQQ...QVQQQQMMNDG................hMYYP
 1012- 1058 (49.69/ 6.64)	..................INTQ..QQQ..QLRQQQQQQQL.................M...L.....QQQQQQQM...RGGNPQAQQ.G............lvmgqQGMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      65.06|      23|      34|     671|     699|       3
---------------------------------------------------------------------------
  671-  692 (11.62/17.34)	.............TMEY.QDRNVQpNNQrsvtfLLN
  693-  719 (25.20/10.98)	CNVSVDVqdmdisTADWpQKLNIQ.........LLP
  730-  747 (28.24/11.76)	CKNSRQV......FFHF.PNNN...ANQ........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.83|      41|      60|      46|      89|       4
---------------------------------------------------------------------------
   46-   89 (70.48/48.87)	LEhFNGGPP...SPIDTGhdYNCTLYCL.....VTYTAGDTAPEMASECFFP
  103-  151 (64.35/34.54)	LQ.FIGGAGqscSHVSEG..LSTALQCLdeikqLRYSGKPTQRHCILICNSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.80|      29|      60|     182|     210|       5
---------------------------------------------------------------------------
  182-  210 (49.24/27.95)	LSIISPRKIPALQKL.FNEACAGDNFHNVP
  216-  239 (21.73/ 8.66)	...VDPRHLVLLKGFqLQERSISPKFD...
  245-  267 (38.84/20.65)	LNVPSPLMTEPLKAV.......ESNFKKPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.17|      24|     163|     810|     835|       7
---------------------------------------------------------------------------
  810-  835 (37.68/20.72)	RYRQKQQQVNAMAgvNAGNSGQGMAN
  981- 1004 (42.50/18.23)	RAKLQQQQLQRMQ..MQQQQQQQMTN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.41|      20|      23|     756|     778|       9
---------------------------------------------------------------------------
  756-  778 (31.87/27.25)	YTLMGHGFAGCVrfpPQSDTKII
  782-  801 (34.54/19.79)	YSAKKKSFIGLI...PNDQMGIV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15578 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQNPLANVGQLPMVPGPTDRRIIWSGTMEYQ
2) PLKAVESNFKKPPTNQTGLQQPSPQHVAHVIQPNVNPISQTSTLPMGMQQVTSPQSSVANTGNLAASMDLMGIPMGPGLSKQPMMVQMRPQPIPQSKAQVSSTMTVQGNMQQRLRQQQPQQQDPNLMMRQPMSSTSGPTGMINVQQSGPLMSQHMSQQGMNQQGMMVSQGPSNMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQNMGMIGQSMQTQPMMQPVGSQNQGMMQSNNAQNQGSMMSSGGIPSPGMLQGVGQNTGMMQSSGSQNSGMLHSSNSQNSGNMMQNPNSGMMQNPNSGLMQQGTGVGNLQQQSQMQQQSQMQQSQMQQQQSQMQQQQSQIQQQQQSQIQQQTQIQQQSQQSQVSSSQNLF
3) QQQQQQQLMLQQQQQQQMRGGNPQAQQGLVMGQQGMQGGGMGQMAPQSGQNFMDDFSSIGEIM
4) VNAMAGVNAGNSGQGMANQVMAQGPNNAAVPIGGTGMMQSQMPIAVNTAQQQVSQQSQQQTQQPPPQQQQQQQQQQQQQSQLQQTGSAAARQTNLMIQSLPNDLQPGKSREMPFQQQPGPGIDQKKMILQQQQQQQQQVQQQQMMNDGHMYYPGHHHYLYHAHRAKLQQQQLQRMQMQQQQQQQMTNPQLRHLLINTQQQQQ
645
255
1022
818
675
628
1084
1019










Molecular Recognition Features






MoRF SequenceStartStop




1) FMDDFSS
1073
1079