<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15577

Description Uncharacterized protein
SequenceMVATSNQLNNQLEEDPVYDVVIVVEKTANLVPYLDELKTAYLIPTLEHFNGGPPSPIDTGHDYNCTLYCLVTYTAGDTAPEMASECFFPTTSTHEFLQTFDNLQFIGGAGQSCSHVSEGLSTALQCLDEIKQLRYSGKPTQRHCILICNSPPYHITAEESQDYRGYNSEQLASMMGKRGVNLSIISPRKIPALQKLFNEACAGDNFHNVPQAHYAVDPRHLVLLKGFQLQERSISPKFDEKKLLLNVPSPLMTEPLKAVESNFKKPPTNQTGLQQPSPQHVAHVIQPNVNPISQTSTLPMGMQQVTSPQSSVANTGNLAASMDLMGIPMGPGLSKQPMMVQMRPQPIPQSKAQVSSTMTVQGNMQQRLRQQQPQQQDPNLMMRQPMSSTSGPTGMINVQQSGPLMSQHMSQQGMNQQGMMVSQGPSNMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQNMGMIGQSMQTQPMMQPVGSQNQGMMQSNNAQNQGSMMSSGGIPSPGMLQGVGQNTGMMQSSGSQNSGMLHSSNSQNSGNMMQNPNSGMMQNPNSGLMQQGTGVGNLQQQSQMQQQSQMQQSQMQQQQSQMQQQQSQIQQQQQSQIQQQTQIQQQSQQSQVSSSQNLFPFGQQGIQPGFISDVSGQNPLANVGQLPMVPGPTDRRIIWSGTMEYQDRNVQPNNQRSVTFLLNCNVSVDVQDMDISTADWPQKLNIQLLPQPMLAGLQQLCKNSRQVFFHFPNNNANQNPSALQNLYTLMGHGFAGCVRFPPQSDTKIILLMYSAKKKSFIGLIPNDQMGIVQGIKTVVARYRQKQQQQVNAMAGVNAGNSGQGMANQVMAQGPNNAAVPIGGTGMMQSQMIQSLPNDLQPGKSREMPFQQQPGPGIDQKKMILQQQQQQQQQVQQQQMMNDGHMYYPGHHHYLYHAHRAKLQQQQLQRMQMQQQQQQQMTNPQLRHLLINTQQQQQLRQQQQQQQLMLQQQQQQQMRGGNPQAQQGLVMGQQGMQGGGMGQMAPQSGQNFMDDFSSIGEIM
Length1031
PositionUnknown
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.04
Grand average of hydropathy-0.686
Instability index63.56
Isoelectric point8.36
Molecular weight114045.89
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP15577
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     249.15|      36|      43|     475|     510|       4
---------------------------------------------------------------------------
  406-  447 (40.71/ 7.92)	SQH...M.SQQGMNQQGM.MVSQ....G.PSN........MMahMQ.gpqnpsaMQQqvVG
  480-  523 (60.25/16.63)	SQNQGMMQSNNAQNQGSM.MSSG....GIPSP........GM..LQgvgqntgmMQS..SG
  524-  561 (52.73/13.28)	SQNSGMLHSSNSQNSGNM.MQN.......PNS........GM..MQ..npnsglMQQ...G
  816-  860 (39.75/ 7.50)	QQQVNAMAGVNAGNSGQG.MANQvmaqG.PNNaavpiggtGM..MQ........SQ....M
  980- 1016 (55.72/14.61)	QQQQQQMRGGNPQAQQGLvMGQQ....GMQGG........GM..GQ........MAP..QS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.83|      20|      26|     248|     273|      10
---------------------------------------------------------------------------
  248-  271 (28.24/17.06)	PSPLMTEPLkaVESNFKkpPTNQT
  276-  295 (35.59/13.81)	PSPQHVAHV..IQPNVN..PISQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.16|      41|     100|     639|     712|      11
---------------------------------------------------------------------------
  307-  376 (56.67/11.56)	SPQSSVANTGNLaasmdlmgiPMGPGLSKQPmmvqmrpqpipqskaqvsstMTVQGNMQQRLRQQQPQQQ
  644-  684 (78.49/59.76)	SGQNPLANVGQL.........PMVPGPTDRR....................IIWSGTMEYQDRNVQPNNQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15577 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQNPLANVGQLPMVPGPTDRRIIWSGTMEYQ
2) PLKAVESNFKKPPTNQTGLQQPSPQHVAHVIQPNVNPISQTSTLPMGMQQVTSPQSSVANTGNLAASMDLMGIPMGPGLSKQPMMVQMRPQPIPQSKAQVSSTMTVQGNMQQRLRQQQPQQQDPNLMMRQPMSSTSGPTGMINVQQSGPLMSQHMSQQGMNQQGMMVSQGPSNMMAHMQGPQNPSAMQQQVVGSQNVSTMPQPGTQNMGMIGQSMQTQPMMQPVGSQNQGMMQSNNAQNQGSMMSSGGIPSPGMLQGVGQNTGMMQSSGSQNSGMLHSSNSQNSGNMMQNPNSGMMQNPNSGLMQQGTGVGNLQQQSQMQQQSQMQQSQMQQQQSQMQQQQSQIQQQQQSQIQQQTQIQQQSQQSQVSSSQNLF
3) QQQQQQQLMLQQQQQQQMRGGNPQAQQGLVMGQQGMQGGGMGQMAPQSGQNFMDDFSSIGEIM
4) SQMIQSLPNDLQPGKSREMPFQQQPGPGIDQKKMILQQQQQQQQQVQQQQMMNDGHMYYPGHHHYLYHAHRAKLQQQQLQRMQMQQQQQQQMTNPQLRHLLINTQQQQQ
645
255
969
858
675
628
1031
966










Molecular Recognition Features






MoRF SequenceStartStop




1) FMDDFSS
1020
1026