<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15572

Description Uncharacterized protein
SequenceMFLNCIVVDGEMSLPTEQSVVQSIEQRVETLIDSVFDNTLIGNAFSNISVKRPGQTLQDRCIDGVKEFWSTLENEPKETRDLALRLLVQHLHKQWNEKRADAICASLDALVENNIVEAKSVCDALLTCDKLTVNEELHWVATFKLARKIIGGVDYKGVRDLLKIVLEKCQLLNSAHNIACLPLIKVVITLVKYIINRNSCLMPAYLAIYEISKFEADKNQLWPHWPLRKVLFDFVDGFRHCAQMVSISGRHQLLPIVGHSMSSSNVWRLNRNTLRFALNGPLPYNRELQEPQNNLLRYVLEQPYSRELVCNMLELNIQAKQLCEVLEQQLVDLLVLALERFEQETSGHSQLQWQHLSSQLIYFVLFQFASFSHIVLSLYEKLKGKNLKKGRHHLMWVLLQFISGSIQKNPIDDFLPVMKLYDLLYDDKEAIPVPDINLPQSTHVMAATCIWIHLNKKAGNIKLRPIPVSLRDHLEFLKQNLKSLTLQGYRIALMCNAYSTDTDNFSRPMGFLVETIYGNNKNTTILPGGVAASAPTTPLQMNFLDSLTVHAKMSLIHSIVTRVIKLAKNKSALALAPSLVETYSRLLVYMEIESLGIKGFINQLLPTVVENQALGILHTLLEMFSYRLHHTQINYRIQLLAHLHQMSSNQPINQNQLYQCVESTILKLIIGLGSSEVQPQLSRISSEAKGGASFLVSDSEELNRALVLTIARAMHVTAVDNMSSVWCEDILNVVMQKTPISWSSNTLACFPQSLAEYFQKNNINNKDNKNQLRTSVENEYRKWKSMGGNESSIISHFSMQSNPPLFLCIIWKTIQDENRVPATAYKVLDKLGPRALTTHLRTLADYLVYEIASSPALQNSSKCIEALTDMIWKYNIIPIDRIVLCLALRSLEGKEAQVQFVVIQFLLTAKPDFKARIHDFIKENTSEHWSQSNWHDIHMNFHKKYPEKFYYEGTQDLNNTLQHQYLPVYFGNVCLRFIPVLDILIHRFLEMVVMQKAVEIILDQIGGLYKFHDHPITYLYNTLFYYEKRLADKHVLKRKLVNAIIGAFNDIRPENWCLSDDYLSYLKKSQDESGWTPDHEYYIKLINRLRSTILGELPPPYPSADWRFNEFPNAAAHALHSICVELMALPVSAQTVGEALIDVSLKPSSLLPPQKDMMSWYNAVGLILTALPESYWSVLNDRILKAITSPMLESPAAHHSPFKILNVSLSHLQNAEHQCSTILELCHGVWHHAGIGQLSHLPQFVKEKLKPVIKHENQFIFLCHLIGPFLQRFHMERTRCLLELTVELYDILLNVDSKSEHLYHMDAICDYLYHIKYMFVGDGVRSEVEKVICKLRPALKVRLRFISHLNIDETTAVVPPTTSTPSISGPSQ
Length1372
PositionTail
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.09
Grand average of hydropathy-0.067
Instability index42.58
Isoelectric point7.32
Molecular weight156887.11
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15572
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     599.21|     192|     258|     806|    1012|       1
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  806- 1012 (307.83/271.08)	FLCIIWKTiQDEN.RVPATAYKVldKLGPRALTTHLRTL......ADYLVYEIASSPALQNSSKCIEAltdMIWKYNIIPIDRIVLCLALR..SL..EGKEAQVQFVVIQFLLTAKPD.FKARIHD.FIKENTSEHWSQSNWHdihmnfHKkyPEKFYYEGTQDLNNTlQHQ...YLPVYFG...NVCLRFIPVLDILIHRFLEMVVMQKAVEIILDQIGG..LYKFH
 1062- 1274 (291.38/213.54)	YLSYLKKS.QDESgWTPDHEYYI..KLINRLRSTILGELpppypsADWRFNEFPNAAAHALHSICVEL...MALPVSAQTVGEALIDVSLKpsSLlpPQKDMMSWYNAVGLILTALPEsYWSVLNDrILKAITSPMLESPAAH......HS..PFKILNVSLSHLQNA.EHQcstILELCHGvwhHAGIGQLSHLPQFVKEKLKPVIKHENQFIFLCHLIGpfLQRFH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.14|      41|     256|     137|     184|       2
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  137-  181 (65.40/46.47)	LHWVatfkLARKIIGGVDYKGVRDLLKIVLEKCQLLNSAHNIACL
  394-  419 (38.16/16.90)	LMWV....LLQFISGSIQKNPIDDFLP.VMK..............
  729-  750 (28.57/11.58)	.......................DILNVVMQKTPISWSSNTLACF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     357.31|     118|     550|       2|     133|       4
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    2-  133 (168.87/159.19)	FLNCIVVDGEMSLPteQSVVQSIEQRVETLIDSVFDNTLIgNAFSNISVKRPGQTLqdrcidGVKEFWSTL.....ENEPKETRDLALRLLVQHLHKQWNEKRADaICASLDALVENNIVEAKSvcdaLLTCDKLTV
  543-  665 (188.44/133.66)	FLDSLTVHAKMSLI..HSIVTRVIKLAKNKSALALAPSLV.ETYSRLLVYMEIESL......GIKGFINQLlptvvENQALGILHTLLEMFSYRLHHTQINYRIQ.LLAHLHQMSSNQPINQNQ....LYQCVESTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.30|      18|      24|     292|     309|       8
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  292-  309 (31.45/19.27)	QNNLLRYVLEQPYSRELV
  318-  335 (29.85/17.92)	QAKQLCEVLEQQLVDLLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.44|      31|     871|     443|     474|       9
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  443-  474 (55.61/44.43)	HvMAATCIWI.HLNKK.AGN..........IKLRP.IPVSLR..DHL
 1304- 1349 (34.83/21.66)	H.MDAICDYLyHIKYMfVGDgvrsevekviCKLRPaLKVRLRfiSHL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15572 with Med23 domain of Kingdom Metazoa
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