<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15571

Description Uncharacterized protein
SequenceMSLPTEQSVVQSIEQRVETLIDSVFDNTLIGNAFSNISVKRPGQTLQDRCIDGVKEFWSTLENEPKETRDLALRLLVQHLHKQWNEKRADAICASLDALVENNIVEAKSVCDALLTCDKLTVNEELHWVATFKLARKIIGGVDYKGVRDLLKIVLEKCQLLNSAHNIACLPLIKVVITLVKYIINRNSCLMPAYLAIYEISKFEADKNQLWPHWPLRKVLFDFVDGFRHCAQMVSISGRHQLLPIVGHSMSSSNVWRLNRNTLRFALNGPLPYNRELQEPQNNLLRYVLEQPYSRELVCNMLELNIQAKQLCEVLEQQLVDLLVLALERFEQETSGHSQLQWQHLSSQLIYFVLFQFASFSHIVLSLYEKLKGKNLKKGRHHLMWVLLQFISGSIQKNPIDDFLPVMKLYDLLYDDKEAIPVPDINLPQSTHVMAATCIWIHLNKKAGNIKLRPIPVSLRDHLEFLKQNLKSLTLQGYRIALMCNAYSTDTDNFSRPMGFLVETIYGNNKNTTILPGGVAASAPTTPLQMNFLDSLTVHAKMSLIHSIVTRVIKLAKNKSALALAPSLVETYSRLLVYMEIESLGIKGFINQLLPTVVENQALGILHTLLEMFSYRLHHTQINYRIQLLAHLHQMSSNQPINQNQLYQCVESTILKLIIGLGSSEVQPQLSRISSEAKGGASFLVSDSEELNRALVLTIARAMHVTAVDNMSSVWCEDILNVVMQKTPISWSSNTLACFPQSLAEYFQKNNINNKDNKNQLRTSVENEYRKWKSMGGNESSIISHFSMQSNPPLFLCIIWKTIQDENRVPATAYKVLDKLGPRALTTHLRTLADYLVYEIASSPALQNSSKCIEALTDMIWKYNIIPIDRIVLCLALRSLEGKEAQVQFVVIQFLLTAKPDFKARIHDFIKENTSEHWSQSNWHDIHMNFHKKYPEKFYYEGTQDLNNTLQHQYLPVYFGNVCLRFIPVLDILIHRFLEMVVMQKAVEIILDQIGGLYKFHDHPITYLYNTLFYYEKRLADKHVLKRKLVNAIIGAFNDIRPENWCLSDDYLSYLKKSQDESGWTPDHEYYIKLINRLRSTILGELPPPYPSADWRFNEFPNAAAHALHSICVELMALPVSAQTVGEALIDVSLKPSSLLPPQKDMMSWYNAVGLILTALPESYWSVLNDRILKAITSPMLESPAAHHSPFKILNVSLSHLQNAEHQCSTILELCHGVWHHAGIGQLSHLPQFVKEKLKPVIKHENQFIFLCHLIGPFLQRFHMERTRCLLELTVELYDILLNVDSKSEHLYHMDAICDYLYHIKYMFVGDGVRSEVEKVICKLRPALKVRLRFISHLNIDETTAVVPPTTSTPSISGPSQ
Length1361
PositionTail
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.09
Grand average of hydropathy-0.078
Instability index43.10
Isoelectric point7.60
Molecular weight155665.66
Publications
PubMed=15562597

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15571
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     599.21|     192|     258|     795|    1001|       1
---------------------------------------------------------------------------
  795- 1001 (307.83/239.35)	FLCIIWKTiQDEN.RVPATAYKVldKLGPRALTTHLRTL......ADYLVYEIASSPALQNSSKCIEAltdMIWKYNIIPIDRIVLCLALR..SL..EGKEAQVQFVVIQFLLTAKPD.FKARIHD.FIKENTSEHWSQSNWHdihmnfHKkyPEKFYYEGTQDLNNTlQHQ...YLPVYFG...NVCLRFIPVLDILIHRFLEMVVMQKAVEIILDQIGG..LYKFH
 1051- 1263 (291.38/188.55)	YLSYLKKS.QDESgWTPDHEYYI..KLINRLRSTILGELpppypsADWRFNEFPNAAAHALHSICVEL...MALPVSAQTVGEALIDVSLKpsSLlpPQKDMMSWYNAVGLILTALPEsYWSVLNDrILKAITSPMLESPAAH......HS..PFKILNVSLSHLQNA.EHQcstILELCHGvwhHAGIGQLSHLPQFVKEKLKPVIKHENQFIFLCHLIGpfLQRFH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     132.14|      41|     256|     126|     173|       2
---------------------------------------------------------------------------
  126-  170 (65.40/43.44)	LHWVatfkLARKIIGGVDYKGVRDLLKIVLEKCQLLNSAHNIACL
  383-  408 (38.16/15.78)	LMWV....LLQFISGSIQKNPIDDFLP.VMK..............
  718-  739 (28.57/10.81)	.......................DILNVVMQKTPISWSSNTLACF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     264.15|      88|     550|       8|     122|       4
---------------------------------------------------------------------------
    8-  103 (130.60/120.63)	SVVQSIEQRVETLIDS....VFDNTLIgNAFSNISVKRPGQTLqdrcidGVKEFWSTL.....ENEPKETRDLALRLLVQHLHKQWNEKRADaICASLDALVENN
  543-  639 (133.55/82.28)	SLIHSIVTRVIKLAKNksalALAPSLV.ETYSRLLVYMEIESL......GIKGFINQLlptvvENQALGILHTLLEMFSYRLHHTQINYRIQ.LLAHLHQMSSNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.96|      15|      24|     261|     281|       7
---------------------------------------------------------------------------
  261-  277 (24.47/32.06)	NTLRFALNGplPYNREL
  283-  297 (28.48/13.76)	NLLRYVLEQ..PYSREL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15571 with Med23 domain of Kingdom Metazoa
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