<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15569

Description Uncharacterized protein
SequenceMANENCNAGSSHLVDDFEAAFQNCVSLLTSQENFNVQDSEETKMSVENSLQRFLESARQMETFFLNKRLILSVARPEHVLNEDILELKAEFERKEKLIEKHHEKLPKWQALLRSNASAMPTSPYSGSQPQSHQNMVPGPPMSTSVGPPMGASANQPMMSQQMTSMAPGQYPGPPAGHPGQYNMPPPAYPQGPLAYLERM
Length199
PositionHead
OrganismBiomphalaria glabrata (Bloodfluke planorb) (Freshwater snail)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Hygrophila> Lymnaeoidea> Planorbidae> Biomphalaria.
Aromaticity0.07
Grand average of hydropathy-0.647
Instability index62.80
Isoelectric point5.50
Molecular weight22115.76
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15569
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.87|      24|      25|     133|     156|       1
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  118-  144 (41.36/15.49)	AMPTSPYSGSQPqshQN.MV...PGPPMSTS
  145-  171 (27.42/ 8.33)	VGPPMGASANQPmmsQQ.MTsmaPGQYP...
  172-  189 (28.09/ 8.67)	.GPPAG....HP.....gQY...NMPPPAYP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15569 with Med28 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASAMPTSPYSGSQPQSHQNMVPGPPMSTSVGPPMGASANQPMMSQQMTSMAPGQYPGPPAGHPGQYNMPPPAYPQGPLAYL
116
196










Molecular Recognition Features






MoRF SequenceStartStop




1) GPLAYLERM
191
199