<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15546

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMDKRIDSRFERLEKALSSLVDSVTKYHPSVAQAEELQAADAQLSLGLEEVQVHQNNHLLIQQLRRTSSALDAQIRDTLTSLASTRKDIVSTQITKFSSEPNHPISYDELLAYARRISKTTLPPAATILTASPSPETQTPAAGGATSDPQPQLSSAVTPSARTPSRTESPVANGTLAQPTNPDQPAQPNSASQNTSLPEGMSQYLNPLSGQVFFPWPLEDKIRSGALASYQMLVEQGIDPRGYDPVTEEERKRKEEDERKAKEEREKAEREDRERQLREEREKLRVERERQREKEQEAWRKASIATGMPGAAMPARAVSGTGDKKQFQFTNLDDLDDDDDDEG
Length342
PositionMiddle
OrganismOphiocordyceps camponoti-rufipedis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Ophiocordycipitaceae> Ophiocordyceps.
Aromaticity0.04
Grand average of hydropathy-0.944
Instability index53.35
Isoelectric point5.03
Molecular weight38062.53
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364141

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15546
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.17|      14|      15|     257|     270|       1
---------------------------------------------------------------------------
  257-  270 (24.27/16.73)	ERKAKEEREK..AERE
  273-  288 (19.90/12.35)	ERQLREEREKlrVERE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.18|      26|      29|     124|     151|       2
---------------------------------------------------------------------------
  124-  150 (42.24/24.98)	AATILTASPSpETQTPAAGGATSDP....QP
  155-  184 (41.94/16.67)	AVTPSARTPS.RTESPVANGTLAQPtnpdQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.32|      21|      29|      62|      82|       4
---------------------------------------------------------------------------
   62-   82 (33.32/20.29)	QLRRTSSALDAQI.RDTLTSLA
   92-  113 (33.01/20.04)	QITKFSSEPNHPIsYDELLAYA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15546 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPPAATILTASPSPETQTPAAGGATSDPQPQLSSAVTPSARTPSRTESPVANGTLAQPTNPDQPAQPNSASQNTSLPEGMSQYLNPLSGQVFFPWPL
2) SGALASYQMLVEQGIDPRGYDPVTEEERKRKEEDERKAKEEREKAEREDRERQLREEREKLRVERERQREKEQEAWRKASIATGMPGAAMPARAVSGTGDKKQFQFTNLDDLDDDDDDEG
121
223
217
342










Molecular Recognition Features






MoRF SequenceStartStop




1) AWRKASIAT
2) DKKQFQFTNLDDLDDDD
3) MPARA
4) YDELLAYA
297
322
312
106
305
338
316
113