<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15532

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMTSNSMPLMLDNAVPVNIQDVDDLFGENVPLTLPVKPQSKKLRQRLDELRAKGCCQRVAWSRLGTIASVTADGQLLQLRFLRCSPDNGSWGMSEATVCEQIHGSRLTRIVHVEWASTSSPELAIIDSRGHVAIASFPIALNQPFVARNWSPDQPDDCNPIVGCYWLPVAPPHQQKPYHVIYGPARKHPAAFMYETSFVHAAGPSHPHASKSALFCITMNGWLKMFWSQNTQKTEETTMELDSVNCTADLVTHAALTSDKKAILIALATSSLSLKLLKVEIQWGGPGSSSERNPMPPTARLNPALVETRLAMTTLLHDVTGEAAAAGSARDITHLKILPSVVDNTGKNTILPLILAVRSRPVTQGSYQTTKTVLDRWEVVEYRSGLDPDFAQLSNRRNSVPLDPPVKTRLHRLDSVTINKVVISIEAIQFGKALILTMSDGTVEYRDRCTLEELYTSEDLSKIMNLRQVGWTFADTEACLQVAFSPTYCSMMQMREDGAICWTKLHYPTGDLGESMKDAHYSGSIAGLAVTVASSLWYQSNFDDTLAIVYKWTGKRRFVHDWVTELIRILKIQVDYSEEMHHDALMRNSPLQSCLSIMNSLGFKGEMAPRSFQSKFSNVCLQIRNVVILITLSSNTPVSVRDKLSPLDEHEVVDALAGCAQWSLDLLSWLVKKLMSLMRDDEFRQRLAPPRFAQMTTYLQQDNDVSLHLVLSSCSRGFLSAICRRIAHLQVLSTRAIEFYRKQPTTTEPTAIQLQRAYHKMHRITSMAPINVAEVEKLLNVVGSDIRQTYQESLPNWVKSGPNAPQGKQVDAAVKTAQVQFEAAMLLGISPPPAFLPLIKKLMDKELPALKASTDQAKIFFGNYLLLGLDDGDLSEKGKRQSSSVHLDMFKRVAICLSPQGPPWRRCTRCACVMEDVFTNRPGFSFVLGQQRRCSCGGSWALLPAGKRLL
Length949
PositionTail
OrganismOphiocordyceps australis
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Hypocreales> Ophiocordycipitaceae> Ophiocordyceps.
Aromaticity0.07
Grand average of hydropathy-0.154
Instability index48.62
Isoelectric point8.60
Molecular weight105645.58
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15532
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     372.26|      99|     392|       4|     165|       1
---------------------------------------------------------------------------
    4-  120 (159.03/103.80)	NSMPlmLDNAVPVNIQDVDDL.............FGENVPLTLPVKPQSKKLRQRLDEL......RAKGCC..QRVAWSRLGTIASVTAD......G...Q.LLQLRFlRCSPDNGS.WGMSE.ATVCeqihgsrltrivhveWASTSSP
  397-  507 (143.29/14.00)	NSVP..LDPPVKTRLHRLDSVtinkvvisieaiqFGKALILTMSDGTVEYRDRCTLEEL......YTSEDL..SKIM..NLRQVGWTFAD......T...EaCLQVAF...SPTYCSmMQMREdGAIC...............WTKLHYP
  860-  939 (69.93/64.22)	..................................FGNYLLLGLDDGDLSEKGKRQSSSVhldmfkRVAICLspQGPPWRRCTRCACVMEDvftnrpGfsfV.LGQQR..RCSCG.GS.W...............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.78|      34|     391|     126|     165|       2
---------------------------------------------------------------------------
  126-  165 (57.10/43.65)	DSRGHVAIASFPIALNQPFvarnWSPDQPDDCNPIVgcY.W
  517-  551 (56.68/29.21)	DAHYSGSIAGLAVTVASSL....WYQSNFDDTLAIV..YkW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.51|      10|     391|     178|     192|       5
---------------------------------------------------------------------------
  178-  190 (11.61/20.45)	HVIyGPArkHPAA
  199-  208 (21.90/ 7.78)	HAA.GPS..HPHA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15532 with Med16 domain of Kingdom Fungi
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