<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15497

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMENQGIAPMPVMEGVAPNAEMADVDDLFGDGDGDGTSMMEQADFDMDNTTMDLPAAAQGPTSASAPYRPPLPSELRMRLDQLKIRGCCQMIAWSRCGTVASISPDGKAVELRFLRIDSDTGEWGLSEPTTSELVHGIDNIPLIHLAWAATKNPELAVFDVLGRVTILSFVSLNNAGYSRKWVSDSLDDLNSVVGCHWLTPVPPGRQYHILNGPAIKENGSDMFRYESSFVHAFPPYHPHPGRSALLCITDNGLLKLFYPGSKAEKVEETTHELESIIVSEDQITHASVCSDKTGLMAVIATASKQLRVIQINIDWGISGEGGNKLPINPMLTEQHVAATTWYQGTNKSCSPLDHAMAKITHLEILASLTDPNTKKWANGIVMSVRSYAPSDPSPHYEPQSVLDRWEIVQEQQTPLLKAFESLGTRRPNASQNSFRLNRLEPVVFNRVIVNIHQMQLGRVLFITFADGSVEYRDRFTMELLYNDSNYTKVHSLHQTGMQFEDQSSCLNVAFSPTGCSMVQICNDKKIKWRKLHTNDDIGENMKTDQQYAAIIAGLTLAAGSCSPSQASFEDVLAIARTMREKPNFIADFIQETTRMLKMVVDYSEESHHDSLVRNYNLQLALSMLCHLGFNGQYKKRSFSGKIAKLSLHARSVIVIVSISSNTPPHLREKLSPLDEPEVVDALTGCHKWSIDLMCWLLDSLFELLQDKEFLELLQQPRGAAEIGNLLQKRNNIALHFVLSSSSRGFMVAILRRLQHMDGLSKKATGFYERNYNPNDSQANLALYRAYSRMHKVMESSLFKFEELERFFSSIAADIRTSYQHLQTVMIKRQQQMGPHNQPPEQAMQQIEAGMKSMQSKNELGLLISPHIPQVLIQVVKKLFATDLPNLRAKMDQKKLLFHDYTLIEAEDSPEALLERKNRGVLVDSFKHVLLPSAEVLAQKKTVQGENYQGGLGGVGSFPSPHIKAPVSTGKLRRCTRCAAAMEDIYGHKSGLTYVLAQLRVCACGGYWGLTPRGQTKV
Length1017
PositionTail
OrganismCeratocystis fimbriata CBS 114723
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Microascales> Ceratocystidaceae> Ceratocystis.
Aromaticity0.07
Grand average of hydropathy-0.274
Instability index46.10
Isoelectric point6.44
Molecular weight113391.41
Publications
PubMed=23931120
PubMed=24563841

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15497
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     522.56|     170|     344|     323|     569|       1
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  141-  321 (271.84/176.97)	PLI...HLA...WAATKNPELAVFD.VLGRVTILSFV.SLNNAGySRKWVSDslddlnSVVGCHWLTPVPPGRQYH...ILN......................GPAIKENGSDMFRYES.SFVHAFPPYHPHP.GRSALLCITDNGL.......LKLFYPGSKAEKVeETTHelESIIVSEDQITHASVCSDKTGLMAVIATASKQLRVIQINIDWGIsGEG
  329-  540 (250.72/266.61)	PMLteqHVAattWYQGTNKSCSPLDhAMAKITHLEILaSLTDPN.TKKWANG......IVMSVRSYAPSDPSPHYEpqsVLDrweivqeqqtpllkafeslgtrRPNASQNSFRLNRLEPvVFNRVIVNIHQMQlGRVLFITFADGSVeyrdrftMELLYNDSNYTKV.HSLH..QTGMQFEDQSSCLNVAFSPTGCSMVQICNDKKIKWRKLHTNDDI.GEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     214.79|      67|     883|      53|     125|       3
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   53-  125 (116.33/83.69)	LPAA...AQGPTSASAPYRPPL......PS.ELRMRLDQLKIRGCcqmiawSRC.GTVASI..SPDGKAVELRFLRIDSDTGEWGL
  930- 1009 (98.46/58.15)	LPSAevlAQKKTVQGENYQGGLggvgsfPSpHIKAPVSTGKLRRC......TRCaAAMEDIygHKSGLTYVLAQLRVCACGGYWGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15497 with Med16 domain of Kingdom Fungi
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