<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15495

Description Cell differentiation protein rcd1
SequenceMLPAAHVYQHHQFHAQPESSWMQQQSQQQQQQQQQQQQQQQQQQQQQQQHLVAAAASAAQQQHFNRLANHGPMVGISNTHVHDTSHEMVVSEDNRRTMAFIADLLNENTREAALLELSKKREQVQELALILWHSFGVMTSLLQEIISVYTLLSPSQLTAAASNRVCNALALLQCVASHNETRTLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDSSEVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDNGLNYICATYERFYAVGTVLSNMVTQLVEQQTARLLKHVVRCFLRLSDNARAREALRQCLPEPLRDATFSAVLRDDAATKRCLAQLLINLTDPSIEHGAGAHNI
Length372
PositionTail
OrganismCeratocystis fimbriata CBS 114723
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Microascales> Ceratocystidaceae> Ceratocystis.
Aromaticity0.06
Grand average of hydropathy-0.183
Instability index52.88
Isoelectric point6.59
Molecular weight41935.33
Publications
PubMed=23931120
PubMed=24563841

Function

Annotated function 
GO - Cellular Component
CCR4-NOT complex	GO:0030014	IEA:InterPro

GO - Biological Function
GO - Biological Process
mRNA catabolic process	GO:0006402	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15495
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      12|      15|      23|      34|       1
---------------------------------------------------------------------------
   23-   34 (23.99/11.68)	QQQSQQQQQQQQ
   39-   50 (24.89/12.37)	QQQQQQQQQQQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.99|      19|      21|     312|     332|       5
---------------------------------------------------------------------------
  314-  332 (32.91/23.62)	LSDNARAREALRQCLPEPL
  337-  355 (31.09/15.29)	FSAVLRDDAATKRCLAQLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15495 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLPAAHVYQHHQFHAQPESSWMQQQSQQQQQQQQQQQQQQQQQQQQQQQHLVAAA
2) QQHFNRLANHGPMVGISNTHVHDTSHEMVV
1
61
55
90










Molecular Recognition Features






MoRF SequenceStartStop




1) SSWMQQQ
19
25