<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15411

Description F-box-like/WD repeat-containing protein TBL1X
SequenceMSMSSDEVNFLVYRYLQESGFQHSAFTFGVESHVDQSNINGSIVPPGALVSIIQKGVQYVEAEVTLNEDGTILDDGSELDHVSLIDAVLPDIVATRHTLLHNRTIKPEIGIKYEDGHYSHVNSVGHGEIMDVDGTVNDTGSNKALILKGHEHEVFVCSWNPTQDILASGSGDGTARLWPMNETGVATPVILRHQFKDLENHKSATKDITSLEWNNDGTLLATGSYDGQARIWSPEGELVKTLSDFKGPIFCIKWNKKGNYLLSAGVDKSTIVWDSNNWEVKQQFSFHQAPTLDVDWQKNTSFASCSTDKIIHVCRIGVEKPVKSFQGHTSEVNAIKWDPSGSLLASCSDDLSAKIWSTKQDTWMFDLQGHKREIYTVTWSPTGPSTAFPNAPLLLASASYDTTVKLWELERGSCVLSLSKHQEPVYSLSFSPDGRYIASGSFDRALNVWSTQTGTLVHSYHGNGGIFEVQWSPRGDKVAACFSDNTLCVLDVRNL
Length495
PositionTail
OrganismStylophora pistillata (Smooth cauliflower coral)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Scleractinia> Astrocoeniina> Pocilloporidae> Stylophora.
Aromaticity0.09
Grand average of hydropathy-0.305
Instability index28.53
Isoelectric point5.28
Molecular weight54643.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15411
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     408.96|      41|      41|     301|     341|       1
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  147-  188 (46.23/23.01)	.......L......KGHEHEVFVCSWNPTQ...........diL.ASGSGDgtaRLWPMNETGVATP
  189-  238 (42.48/20.58)	VilrH.QFkdlenhKSATKDITSLEWNNDG..........T.lL.ATGSYD...GQARIWSPEGE.L
  239-  269 (45.11/22.28)	V...K.TL......SDFKGPIFCIKWNKKG..........N..Y..............LLSAGVDKS
  280-  321 (55.22/28.82)	V...KqQF......SFHQAPTLDVDWQKNT..........S..F.ASCSTD...KIIHVCRIGVEKP
  322-  363 (62.91/33.78)	V...K.SF......QGHTSEVNAIKWDPSG..........S.lL.ASCSDD...LSAKIWSTKQDTW
  364-  414 (55.33/28.89)	M...F.DL......QGHKREIYTVTWSPTGpstafpnaplL..L.ASASYD...TTVKLWELERGSC
  415-  456 (58.72/31.07)	V...L.SL......SKHQEPVYSLSFSPDG..........R..YiASGSFD...RALNVWSTQTGTL
  457-  492 (42.95/20.89)	V...H.SY......HGNGG.IFEVQWSPRG.........dK..V.AACFSD...NTL..CVLDV...
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15411 with Med16 domain of Kingdom Metazoa
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