<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15406

Description WD repeat-containing protein on Y chromosome
SequenceMPKESVTQETTPAAMSFLQIPETSSAVELVPGNSRVGSVASSVKSGSIHFSTTVRMLAPMIWSRIQSRRAKSVAFTTPVSFNTNDSSNDNTKGLEPLRLEEELDIQHLETLMFKFKTHIPDKVELKKWLTRRGSEYRDPTRFHSAGLMTQEEFHEMLADLLEVETWDRHKVALFEKEIGTLFKKVDIASDGLVDWDEFCTYLMLQFDENDQATKVNGNTFIPKPNIVRIDHNKETTTKILTDFNPMRYVTISKEGIIGVWSTELDLQRKIEMEHNNSDAERTSNKRHIKMWVTDAVAMPNVHKMALSTTNRDIHFYDMSTPIYIPQFHLCALGNVVLCLDYCYNKKLPAGKSMLFLGMDNGVILFLVFSTPLKGLFETPFKKTSGSHQVYLQDIPTHSRFVSCHTLGQVHSDWVRRVRYIPAKEFVISCSGSGKDSLVVRDIDDKKRKTYTFKVAKGVECFDYSHNLNVICTGGVDHAVRLWNPYVTVKPVAIMKGHQSSIIDLAIHEGLEQVFSYDKDGVLKAWDIREQVCHQTIPVRFPFGHRIPEHGPFPFLLITSPINSLFIGSNDCLAEIKIVAMGANKNGKTTHWRPLTAALYNSSMGHVITACEGSVVTFWDLNTGRQAQHISEAHGTEEISCMTIDPSGRRLMTGDRSGNIHVWNASNGHLLNKLEPVEENEVTGIISLPEKSKIITVGWNRKILVYYDDMQTFCLRPNAGWKGGQLHQDDILTAAYCPPNYLATASFDGDIILWGLDREKMIRRLKKGSGSLLKAKIKKLGLIQNKKSYQNSCGAPVDKLLFLKSRAQWRTQESAVLVSSEAGTLEFWCFYGANRPMGRYFAASEDESTIFALTTDPSNEMLITGDSNGTISVWDISSYCISRAEAIVAQVWSTTQRAGSTDDNPEGKPPVLSSWHAHYGSVSSVEYIRRDEGALLLSASEDCTARLWTLNGQCIGMFGQKRLWNVDDPSSYRLAGNNGLEGKETEEEKGSNGRKSQLGEMGGSNADRTSPLSVSPVRRSTSPLISEQPHLSRSTPTTPRERSFLPSIEVAMAGEDGSEEDPYSWMKNEYYRSMTSLVLERSSKNSQSWSILGDHYNKDFRRRMETRQSRRDHVGNVNRKLTCGGGLGNTCSPFQALHIPDTKEYELPKNMPVSSRMTHKTNRASAEPIWMAVRQGALPPLPALKRSDSFLTMADSASGNTSQFSFLVE
Length1208
PositionTail
OrganismStylophora pistillata (Smooth cauliflower coral)
KingdomMetazoa
LineageEukaryota> Metazoa> Cnidaria> Anthozoa> Hexacorallia> Scleractinia> Astrocoeniina> Pocilloporidae> Stylophora.
Aromaticity0.08
Grand average of hydropathy-0.408
Instability index48.26
Isoelectric point7.40
Molecular weight135541.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
calcium ion binding	GO:0005509	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15406
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     257.78|      68|     208|     590|     665|       1
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  231-  260 (27.51/ 8.06)	.............................................HNKETTTKILTDFNPMRYVTISKEGIIGVW...
  590-  665 (116.21/78.95)	HWRPLTAAlynssmghVITACEGSVVTFWDLNTGRQ..AQHISEAHGTEEISCMTIDPSGRRLMTGDRSGNIHVWNAS
  807-  876 (114.05/63.19)	QWRTQESA........VLVSSEAGTLEFWCFYGANRpmGRYFAASEDESTIFALTTDPSNEMLITGDSNGTISVWDIS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     269.51|      86|     880|      10|     102|       2
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   10-  102 (130.27/102.26)	TTPAAMSFLQIPETSSAVeLVPGNSRVGSVaSSVK.....SGSIHFSTTVRMLApmiwsRIQSRRAKSVA.FTTPVSFNTNDSSN...DNTKGLEPLRLEEE
  893-  987 (139.24/87.90)	TTQRAGSTDDNPEGKPPV.LSSWHAHYGSV.SSVEyirrdEGALLLSASEDCTA.....RLWTLNGQCIGmFGQKRLWNVDDPSSyrlAGNNGLEGKETEEE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.54|      23|      24|     282|     305|       3
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  282-  305 (38.17/29.37)	TSNkRHIKMW.VTDAVAMPNVHKMA
  308-  331 (40.37/26.23)	TTN.RDIHFYdMSTPIYIPQFHLCA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.45|      52|     717|     372|     425|       4
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  372-  425 (88.86/55.73)	LKGLFETPFKKTSGSHQVYLQDIPTHSRFVSC.HTLGQVHSDWvrRVRYIP.AKEF
 1091- 1144 (85.59/48.34)	LGDHYNKDFRRRMETRQSRRDHVGNVNRKLTCgGGLGNTCSPF..QALHIPdTKEY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15406 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RLAGNNGLEGKETEEEKGSNGRKSQLGEMGGSNADRTSPLSVSPVRRSTSPLISEQPHLSRSTPTTPRERSFLPSIEVAMA
972
1052










Molecular Recognition Features






MoRF SequenceStartStop




NANANA