<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15371

Description Uncharacterized protein (Fragment)
SequenceMGDSQVANIVSEILRVEAVEEAFSCFLVHKPEEENEMLATYQKKLCGVMTNLSAEMQESALRQYLTPAAVLTNRYKMKQLLGLLETLVNTNIIQARMLCDCILSNEKLIYQNADFWIESFNLIRRIIGGVDYKGVREIMKGCREKAHTLPVKLNSSTMPQLKALYNVIEYIFDRNASLLPAYFIVTEIQKDYPGNNHWPHWQLAKLLSSFVESFKPCAQMVSIIGHSQMLPVVEFSGYADHLVNPWRLDPTTLKFSLKGNLPYDEELLKPQIALLRHVLQQPYSRDMMCSMLGLQKQHKQRCIALEDQLVELMILPMEKSEQENEDDEMSSSHWCWLHLSSQVIYLILIGFASFPNIVMGLHSKLTGHDMKKGRDHLMWVLLQFISGSIQRNPSSNFLPIIKLYELLYPEKEPLPVPDCTKAHSTHQMAVVCIWMHLLKKAETEHKTMTMPQNLKVQYEFLQHLMTSNNTPTLMGSDYRIALLCNAYSTNQEYFARPMGVIIETLFGNQKPMPNGNPTTPLPNVPLSMCILDSLTLHCKMSLIHSIVTHVAKLAQNKSNMPGNNMMAPALVETYSRLLVYTEIESMGIKGFIHQLLPNVFKSHAWGILHNLLDMFSYRIHHVQPHYRVTLLSNIHSLAAYPQANQTQLQLCFESTALRLITSLGSSGVQLQMSRVVSEPKSLVSSESEELNRVLVLTLARGIYMTGAGSDGAAVKELLTTIMTNTPHMWSQHTLQCFPPMLVEFFAQ
Length747
PositionTail
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.08
Grand average of hydropathy-0.057
Instability index44.99
Isoelectric point6.76
Molecular weight84969.17
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15371
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.71|      29|     147|     429|     488|       1
---------------------------------------------------------------------------
  144-  175 (45.80/10.54)	EKAHTlpvKLNSSTMPQ.LKALYNVIEYIFDRN
  439-  468 (47.91/70.68)	KKAET...EHKTMTMPQnLKVQYEFLQHLMTSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     217.63|      72|     134|     187|     274|       2
---------------------------------------------------------------------------
  187-  274 (96.71/105.59)	EIQKDYPGNNHWPHWQL.....AKLLSSFVeSFkpcAQMVsiIG.HSQmLPVVEFSGYADHLVnpWRLdpttLKFsLKGNL...PYDEELlkPQIAL
  323-  403 (120.92/74.44)	ENEDDEMSSSHWCWLHLssqviYLILIGFA.SF...PNIV..MGlHSK.LTGHDMKKGRDHLM..WVL....LQF.ISGSIqrnPSSNFL..PIIKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.23|      28|      74|     521|     549|       4
---------------------------------------------------------------------------
  521-  549 (48.26/45.78)	LPNVPLSMC..ILDSLtLHCKMSLIHSIVTH
  596-  625 (48.97/40.30)	LPNVFKSHAwgILHNL.LDMFSYRIHHVQPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.76|      11|     145|     478|     488|       5
---------------------------------------------------------------------------
  478-  488 (21.41/10.88)	YRIALLCNAYS
  626-  636 (20.35/10.07)	YRVTLLSNIHS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15371 with Med23 domain of Kingdom Metazoa
Unable to open file!