<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15370

Description Uncharacterized protein
SequenceMAGQGHQFPGNFQGNAAGMRSGFGGGPMSGQMQSMPNQLAGVMGGPMANTGGMVGMGNQMVPPYGATMQNQMGNMGMGPQGMGVGVSGGPGAGMGPQNVQQTGGMQTVAVSNTTAPPPAQRPPHNHRKTRSLTLHHCANLDKKQCKYCEQNPRCISDIKSYTTAERTHGGENTSNDKKAKMQEQLRTIRLLFKRLRLIYEKCNETCQDEAENKALDERRNTESYRLALKKIENLQNRRGMYPAKEQADDADDGYVQLEEGF
Length261
PositionHead
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.05
Grand average of hydropathy-0.857
Instability index39.45
Isoelectric point9.01
Molecular weight28313.69
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15370
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     111.26|      24|      25|      47|      70|       1
---------------------------------------------------------------------------
   20-   37 (27.24/ 6.91)	RSGFG.G..GpMSGQM.....QSM..PN
   47-   70 (49.10/17.15)	MANTG.GMVG.MGNQMVPPYGATM..QN
   72-   98 (34.91/10.50)	MGNMGmGPQG.MGVGVSGGPGAGMgpQN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.52|      28|      31|     120|     150|       2
---------------------------------------------------------------------------
  123-  150 (53.97/35.07)	PHNHRKTRSLT....LHHCANL.DKKQCKYCEQ
  152-  184 (40.55/18.17)	PRCISDIKSYTtaerTHGGENTsNDKKAKMQEQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15370 with Med30 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAGQGHQFPGNFQGNAAGMRSGFGGGPMSGQMQSMPNQLAGVMGGPMANTGGMVGMGNQMVPPYGATMQNQMGNMGMGPQGMGVGVSGGPGAGMGPQNVQQTGGMQTVAVSNTTAPPPAQRPPHNHRKTRSLTLH
1
135










Molecular Recognition Features






MoRF SequenceStartStop




NANANA