<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15363

Description Uncharacterized protein
SequenceMGVTVLQQYPVPENKTGTYVIELLTKRILALGATQQGQFLVDCESYLSHPQMGTTKTVHIFHNSEQPASVFSILDTGAKNIHVIADGLFDLLMMKLSQNYTSKKQTKIESKGPRFELGDFCVKLGSVTMNQSFKGILVEVEYRPCVTANAVWGLLREFLQGLLGPSVPVQPPQHLLSRMNEIYTPIDTIYQYLEHFSAYRKITGMRICRILSVELDIVDCGVDHAVDVPEGDVPLKMFPWVGILFYSYYGMEGDSRSVANVVLIHKEFVVAAAADIGPMPKHNFRRNSRVLLGEAWDRPGRRVRNYILHPEYGETFNTLALVQLKDPIRDLLIRPACPPPNILRNPKFYVIKMKEDIEALEKEVIPVLHIPGEMCKEFYVAANTSDAFKFLIRACCQLYSKMQRPPHVACAVSADSQAVCLGLGVRGPGCGAPSRYLDMMSYYPWIQRSLAEFNRVTISKINKQKYVLRSSHAYQRFGACDEEEKINLVFRESLVLRTDNNQYQFLTYNMTIFENVEYTCLTLELTNASAVSEMRVKHYCPRVSYGPACYFYKGSMFEISVYIMFSDKCLFEMFAWGFKKNMTLLDIQEWKWEEGTYYEDFSMTRVEYRGPTYMTDYGYEPLDYGMWVPEYDIWTTTEMDNSTTPTPPPIRLNPERPRRPTQSTASTKRTKPTPRRKTKTTTTTSRPRRG
Length690
PositionHead
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.11
Grand average of hydropathy-0.283
Instability index46.38
Isoelectric point8.47
Molecular weight79132.42
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15363
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     144.16|      36|      69|     509|     546|       1
---------------------------------------------------------------------------
  509-  542 (43.77/28.14)	......................................NMTIFENVEYTclTLELTNASAVS..EMRVKHYCPR
  543-  612 (46.08/23.45)	VSYGpacyfykgsmfeisvyimfsdkclfemfawgfkkNMTLLDIQEWK..WEEGTYYEDFS..MTRVEYRGPT
  615-  658 (54.31/28.81)	TDYG............................yepldyGMWVPEYDIWT..TTEMDNSTTPTppPIRLNPERPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.88|      22|     108|     251|     272|       2
---------------------------------------------------------------------------
  251-  272 (37.37/28.50)	MEGDSRSVANVVLIH....KEFVVAA
  357-  382 (32.51/23.85)	IEALEKEVIPVLHIPgemcKEFYVAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.47|      19|      26|     458|     477|       4
---------------------------------------------------------------------------
  458-  477 (28.87/22.10)	ISKINKQKYVLRS.SHAYQrF
  486-  505 (28.59/16.80)	INLVFRESLVLRTdNNQYQ.F
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15363 with Med20 domain of Kingdom Metazoa
Unable to open file!