<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15362

Description Uncharacterized protein
SequenceMVVNAPDSPVQAEVIFVIEATAANSAYIGELKTNYIVPTLEYFHGGPLEEGGGSGSVYAIVTYKAADCHPGVPVSTFGPYTSPQTVVETVDKIQYIGGHAESRACVTEALTAALACFDELGRTDIPIHVLLLCCSPPYSAYAGGLVPAGAPATVEQAARLLGERGAQVSVAAARRVPALHALYEHAGGELHQAQQRNYAKDPRHLVLLRGYSLKERPPSPAPPPVPDIQADVYGQGRGTTGPARPGAQNFPRPGVAATAGVGPVGNVAGVAGVAGVGNAACGRGAGNWLAPPRAPLYANNSALLTQLAQPSYPPPPPPPAHAAQRMPSMVTPGPSGAQLQRSYIWSGVIEWMEKGKQPGDQQKTTKHLPCQVSASTKDIEPELKVDTWPNKLLMQLMPKQLISNIGGQYLKDSKSVLFHLQPSEALDSLTKVMVNGFAGCVHFSPMPTPPQCDIKVLILLYTPDKKAYLGFIPNNQATFVDRLRKVIQQQKISQIISKQQLPAAVSNAGGMAQNMPNATMAGSSAMSNAGMTSGGLGAGMAGGMQPVGNVGNVGNVGNVGNVGQMAGPGPSQGMVQSQMQQHQQGMMIGGSIQQQVQQVGGKGPRPVTQLDGLEAARQQNLEKIQHLQQTLEAAHQQEAQFKSQMDIMSHLHAAQQQEQHYKQLEEQQRKHQLQQQLQQQIRGAQGATHPPRIMRPLLPSNPGLRHLLQQQPQYRPGGGAPRPASQPQQFDDVNNYSDFI
Length740
PositionUnknown
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.05
Grand average of hydropathy-0.343
Instability index50.44
Isoelectric point8.77
Molecular weight78668.57
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15362
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     178.51|      32|      32|     509|     540|       1
---------------------------------------------------------------------------
  234-  262 (31.12/11.24)	GQG..RGTtgparpG..AQNFPRPGVAA......tAG..VG
  263-  281 (23.55/ 6.63)	PVGnvAGV......AGVAG............VGN.AA...C
  509-  534 (42.78/18.35)	..............GGMAQNMPNATMAGSSAMSN.AGMTSG
  535-  554 (34.47/13.28)	GLG..AGM.....aGGM.Q..P.........VGN.VG.NVG
  555-  589 (46.59/20.67)	NVG.nVGN.....vGQMAGPGPSQGMVQSQMQQHqQGMMIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      78.05|      16|      17|     631|     646|       2
---------------------------------------------------------------------------
  610-  625 (20.01/10.13)	LD...gL..EAARQQNLE.KIQ
  626-  644 (17.42/ 7.71)	.HlqqtL..EAAHQQEAQFKSQ
  645-  663 (22.77/12.69)	MDimshL..HAAQQQEQHYK.Q
  664-  680 (17.84/ 8.11)	LE.....eqQRKHQLQQQLQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.28|      24|      91|     197|     226|       3
---------------------------------------------------------------------------
  197-  226 (37.30/25.70)	NYAKDPRH..LVLLrgyslkERPPSPAPPPVP
  296-  319 (47.56/20.81)	LYANNSAL..LTQL......AQPSYPPPPPPP
  697-  721 (35.42/13.53)	LLPSNPGLrhLLQ.......QQPQYRPGGGAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     454.02|     149|     324|      21|     178|       4
---------------------------------------------------------------------------
   21-  178 (233.03/144.69)	TAANSAyiGELKTNYI.VPTLEYFHGG..PLEEGGGSGSVYAIVTYKAADCHPGVPVSTFgPytsPQTVVETVDK..IQYIGGH..............AESRACVTEALTAALA.C..FDELG.RTDIPIHVLLLCCSPPYSAYAgGLVPAGAPATVEQAARLLGERgaQVS.VAAARRVPA
  331-  503 (220.99/114.93)	TPGPSG..AQLQRSYIwSGVIEWMEKGkqPGDQQKTTKHLPCQVSASTKDIEPELKVDTW.P...NKLLMQLMPKqlISNIGGQylkdsksvlfhlqpSEALDSLTKVMVNGFAgCvhFSPMPtPPQCDIKVLILLYTPDKKAYL.GFIPNNQATFVDRLRKVIQQQ..KISqIISKQQLPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.69|      11|     398|     283|     293|       5
---------------------------------------------------------------------------
  283-  293 (23.76/12.92)	RGAGNWLAPPR
  682-  692 (22.93/12.17)	RGAQGATHPPR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15362 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERPPSPAPPPVPDIQADVYGQGRGTTGPARPGAQNFPRPGVAATA
2) NNSALLTQLAQPSYPPPPPPPAHAAQRMPSMVTPG
3) NVGNVGQMAGPGPSQGMVQSQMQQHQQGMMIGGSIQQQVQQVGGKGPRPVTQLDGLEAARQQNLEKIQHLQQTLEAAHQQEAQFKSQMDIMSHLHAAQQQEQHYKQLEEQQRKHQLQQQLQQQIRGAQGATHPPRIMRPLLPSNPGLRHLLQQQPQYRPGGGAPRPASQPQQFDDVNNYS
215
299
558
259
333
737










Molecular Recognition Features






MoRF SequenceStartStop




NANANA