<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15358

Description Uncharacterized protein
SequenceMGIMYEKRPLKRPRLGPPDVYPQEPRQKEDELTSTNVKHGFSTTPQSSDEFGTARNFNYSASKIGQFFSSILSKKEELNTLPDCGRKRQQVNPKDNFWPATARTKAQIEAWFKDLAGSKPLSQLAKKAPNFNKKEEIFITLNEYQVSMPRAAWFIKLSSAYTVAVSEAKIKKRQLPDPTTEWTTTLIKFLKDQIPKLAEHYQSAVPGNVSDKTPPSQSGQGTPSHNSSGNPPGSSTPNSTVPNSMHSPGNSSTLGSLTPGGSESTDWRQALKLWNYCTRLAKYLLDEGLLDRHDFLTWIIELLDKRAPDDGLLRLFLPLALQHMAEFTCCESLSRRLATSCAKKAAAICSVLSDTTLRTLNQPAVFTKTVEKSIEQNGAPMSPAPNDTNADVKPNITQIKREPTPVENQGTPNPNHSLGTPNPNHSLGTPNPNHSLGTPNPPQPMDVQVKEERASPARDTKTTLTTVVAAAMNPVQVGFGEILNCSYHRDVIIQLATILQIICIECPTAMVWSGCGSSLQGSPLDLLPLPPSALPMPHMDTAITEEHRKLVYEAEQEISARSKKAESKWCTDKWQTSSQARVLAVLEALDRHCFDRVDPNNNLDTLYKEVFANCPPPSKDNSDTKDPEWACPYSVVRVVCEWAVCGARWGEHRAQAAAALLDRRQHHTTHHHHDHHATGSDDKESISSGTGLYNGPPIFQNLLLRFLDNDAPVLDESPNAPPGNRQQFANLVHLFGELIRRDVFSHDAYMCTLISRGDLISPTEPTSTGGASHTVAPPANSTGTNHNMDDDIFAGIDLKPKMEENVRMDLDDSKIDDDLDKLLQHIKEDQQNSMDAPDSPKDPGEPSHGVNSPMMGPSGMSIPGIPSMSMGPMSVPGIRTTSSGPSSGCGVTQGTVSRHYHYTLHFPLPPAEPEHTPHDANQRHILLYGVGRARDDARHVVKKMTKEICKLFSKKFSIDVAEGGKIKKHSRNEFNFEAVTQKFQAMSMYEQGAVSWAVGSAVCEALAAYAGGATTYLPQPEHVAFALDLMEIALNVHGLIETCIQILKELSEVESALIARGAPSSGLAAPRAYTSALALYTVGALRKYHSSLLLCVEQTSAVFEQLCRLVKCVVNPGDCGSAERCVLAQLHDLYKAAAHLCHAPHADTFANAYPKIKQALYSPLQPTPSNYPYNPQFLSEFFTNPRKGKIEIAWARQVAESPANRYSFVCSAMLAVCREVDNDRVNELGVVCAEMTAWCSGLAAEWLGALVALCGAQHYPASAPHAAPPPLYPDLLLHRDLHDQAAHDALAVFTCILVARHCFSLEDFVRHAALPSLLKACGGGGNSVNAPNAPSPDTGARLTCHLLLRLFKTVDTPQPGLYSVSTSPGPGGAAAGVRLSCDRHLLAAAHKNIGVGPVLATLKAILMVGDSTARDGGKPGGKKSCELSHILGTSDTVPTDAQLDLMSMVDSEMSGGHRTPRGSGGVGSTLLDSSQSLSSLARRVLAEICSEEWVLQKCLQNPDELYQPDMLLDPMLTSRQAQRLLHMICYPESASHTHPDLDQKTMITRLLENLEQWSLRMSWLDLQLMFKQFPGGSSELSAWLDTVARAVINVFQQPAPPPPDKDRTGTDRGVVSTSKWSESVWLVAPLVAKLPAAVQGRVLKQAGQILESGWGAGCSGNCSSGGGGGGSSHRDCKSHQSPSYKGLLSSIHTQLVHYLTHAREHERAACGDGWQDDAAPDALLLRFSLAGGMFDAIRRSYQLTADWAVLLTQLVAHQLIDAYNNSNLFTTVIDMLATLIHSTLADGGDDNNRKHYQNLMKKLKKEIGDRHGPSVQCVRQLLPLSKNTIIEVIACEPIGCLVDQKGNKITGFDSDKKQGLRLTDKQRVSSWELVEGGRNPAPLSWAWFAATKIERKPLTYENAHRLLKYHTHSLVKPLSYYLEPLPLPPEDLETNDSKQDNGSLDSSPTGAGKTRSRNAPCKNIKKSKPTTPTNGVAAPGGVGTAGLPPQQPQQPQFMQQQQWFPPPGQNYYNPPAGVSPRSVSAAPPSNNQSKQALSNMLRQRVPFNQMTQMQVNQSGGYPGAPHTRAPFPRQTMRQMQPNQMGAMQSAQMNPMGGMGGMGPMGQMGGVQMAGQMGGGQMAATQMGAGQMSAGQMAGGQMAGMGGQMFGSQYAGMQQGYGGYGQQMMQGGQQQMMNQGMGQGVNQMGQQVNPMSQGVNSIGQNVGVGQMNQGVGQPSQMPQSMGQMSQGMGQMGQPMGQMGQMGQGGGMSAMNSQAASMGPQGGNSMGGFPGQQTFQQNMMGSRASQEAYLAQQRQNARPSYMQQAPNVTMGGMGGPAPPYPRGMQNQQSSQYQQQMNQQRMRQQMLAMQQQQQGPLVQHLQRQQYQPPY
Length2371
PositionKinase
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.06
Grand average of hydropathy-0.465
Instability index47.85
Isoelectric point7.55
Molecular weight257557.06
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15358
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     113.25|      17|      17|    2106|    2122|       1
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 2106- 2122 (38.65/17.06)	QMGGVQM.AGQMGG..GQMA
 2125- 2142 (27.91/ 9.98)	QMGAGQMsAGQMAG..GQMA
 2229- 2242 (23.29/ 6.94)	Q.G.....MGQMGQpmGQMG
 2306- 2321 (23.41/ 7.02)	QAPNVTM.GG.MGG..PAPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.90|      16|      17|    2143|    2159|       2
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 1986- 2000 (27.57/ 6.93)	GLPPQQ..PQQPQFMQQ
 2143- 2158 (34.85/11.63)	GMGGQMF.GSQYAGMQQ
 2162- 2178 (26.47/ 7.39)	GYGQQMMqGGQQQMMNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.15|      16|      17|     410|     425|       3
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  231-  241 (21.58/ 6.50)	P.PGSS..TP..NS..TV
  412-  429 (33.81/14.41)	PNPNHSLGTPNPNHslGT
  430-  441 (24.75/ 8.55)	PNPNHSLGTPNP......
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.23|      21|      21|    1197|    1217|       4
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 1197- 1217 (37.97/33.43)	QVAESPANRYSFVCSAMLAVC
 1219- 1239 (39.26/34.90)	EVDNDRVNELGVVCAEMTAWC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.35|      21|      21|    2180|    2200|       5
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 2082- 2103 (27.16/ 7.45)	NQMGAmqsaQMNPMG..GMGGMGP........................
 2185- 2207 (38.15/13.23)	NQMGQ....QVNPMS.QGVNSIGQ....................nvGV
 2208- 2250 (27.42/ 7.59)	GQMNQ....GVGQPS.QMPQSMGQmsqgmgqmgqpmgqmgqmgqggGM
 2251- 2272 (29.62/ 8.75)	SAMNS....QAASMGpQGGNSMGG......................FP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.12|      14|      17|     843|     857|       6
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  843-  857 (26.23/17.66)	PGEPSHGVnSPMMGP
  863-  876 (29.88/15.49)	PGIPSMSM.GPMSVP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.23|      17|      17|     599|     615|       7
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  586-  599 (18.52/ 8.67)	...LEALDRHCFDRVDP
  600-  616 (32.45/21.85)	NNNLDTLYKEVFANCPP
  619-  632 (22.26/12.21)	KDNSDT..KDPEWACP.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      58.19|      14|      17|    2333|    2346|       8
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 2277- 2289 (16.80/ 6.43)	FQQN..MMGSRASQE.....
 2334- 2351 (23.12/12.10)	YQQQ..MNQQRMRQQmlamQ
 2352- 2366 (18.27/ 7.75)	QQQQgpLVQHLQRQ.....Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.04|      16|      22|    1272|    1290|      10
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 1265- 1280 (29.60/13.37)	HAAPPPL..YPDLLLHRD
 1284- 1301 (23.45/18.21)	QAAHDALavFTCILVARH
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.57|      16|      17|    1144|    1160|      11
---------------------------------------------------------------------------
 1144- 1160 (26.04/18.97)	PHADTFANaYPKIKQAL
 1163- 1178 (33.53/20.35)	PLQPTPSN.YPYNPQFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.60|      15|      21|     280|     300|      12
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  280-  296 (22.29/27.98)	LAKYLLDEGLLdrHDFL
  303-  317 (27.31/11.56)	LDKRAPDDGLL..RLFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.56|      20|      21|    1546|    1565|      13
---------------------------------------------------------------------------
 1515- 1542 (23.72/14.21)	MLTsrqaqRLLHMIcypESA...SHTHP.DLD
 1546- 1565 (37.71/27.92)	MIT.....RLLENL...EQW...SLRMS.WLD
 1566- 1585 (17.13/ 7.74)	LQL.....M....F...KQFpggSSELSaWLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.89|      22|      23|    2031|    2053|      14
---------------------------------------------------------------------------
 2031- 2053 (36.58/24.39)	NQSkQALSNMLRQRVPF..NQMTQM
 2056- 2079 (39.31/21.88)	NQS.GGYPGAPHTRAPFprQTMRQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     277.22|      92|     202|    1410|    1512|      15
---------------------------------------------------------------------------
 1410- 1512 (144.99/100.17)	DSTARDGGKPGGKKSCE...LSHILGTSdtVPTDAQLDLM....SMVDSEMSGG..HRTPRGSGGVGSTLLD..SSQS......LSSL..........ARRVLAEICSEEWvlqkclQNpDElyQPDMLL
 1606- 1724 (132.23/68.52)	DRTGTDRGVVSTSKWSEsvwLVAPLVAK..LPAAVQGRVLkqagQILESGWGAGcsGNCSSGGGGGGSSHRDckSHQSpsykglLSSIhtqlvhylthAREHERAACGDGW......QD.DA..APDALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.93|      13|      18|     984|     996|      17
---------------------------------------------------------------------------
  984-  996 (24.97/15.32)	QAMSMYEQGAVSW
 1004- 1016 (21.96/12.48)	EALAAYAGGATTY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     235.55|      71|     198|     687|     770|      18
---------------------------------------------------------------------------
  687-  770 (114.36/74.94)	SSGTGLYNGP.PIFQNLLLRFldndaPVldesPNAPPGNRQQFANLVH..LFGELIRRDVFSH.....DAYMCTLISRGDLISPTEptstGG
  886-  964 (121.19/57.06)	SSGCGVTQGTvSRHYHYTLHF.....PL....PPAEPEHTPHDANQRHilLYGVGRARDDARHvvkkmTKEICKLFSKKFSIDVAE....GG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.30|      19|     202|    1119|    1142|      19
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 1095- 1113 (34.50/25.52)	CVEQTSAVFEQLCRLVK.....CV
 1119- 1142 (30.80/36.26)	CGSAERCVLAQLHDLYKaaahlCH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.06|      18|      22|    1750|    1767|      22
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 1749- 1766 (28.75/17.44)	VLLT.......QLVAHQLIDAYNNS
 1767- 1791 (22.30/11.77)	NLFTtvidmlaTLIHSTLADGGDDN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15358 with Med12 domain of Kingdom Metazoa
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