<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15353

Description Uncharacterized protein
SequenceMHTVNEIISVLERINITKELLETTRLGKHVNELRRKTSDPSLARRAKVLVKRWRDLVIPTVASPGHTGSNRSSAERQVRGRLGGTPLTSPALSRQVVSPAVNSPRPPSRPAWGGYESDSQDVILVDDEPPAAPAPTAAALLANTHKPLTPPVKRPPSPEPLYDEKKAKRDKKPKKKRGHSRAGDLAAAPVLPRAALESDAALAAALEAADSGRDELGRPARPERFAEWHECARLGELVALPYVVID
Length246
PositionUnknown
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.03
Grand average of hydropathy-0.559
Instability index68.54
Isoelectric point9.90
Molecular weight26682.13
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15353
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.84|      57|      63|      99|     161|       1
---------------------------------------------------------------------------
   99-  159 (89.51/50.82)	PAVNSPRPPSRPAWGgyESDSQDVILVDDEPPAA...PAPTAAALLAnTHKPlTPPVKRPPSPE
  164-  223 (87.32/34.58)	EKKAKRDKKPKKKRG..HSRAGDLAAAPVLPRAAlesDAALAAALEA.ADSG.RDELGRPARPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15353 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PTVASPGHTGSNRSSAERQVRGRLGGTPLTSPALSRQVVSPAVNSPRPPSRPAWGGYESDSQDVILVDDEPPAAPAPTAAALLANTHKPLTPPVKRPPSPEPLYDEKKAKRDKKPKKKRGHSRAGDLAAAPVL
59
191










Molecular Recognition Features






MoRF SequenceStartStop




1) PEPLYDEKKAKRDKKPKKKRGHSRAG
2) RRAKVLVKRWRDLVIP
158
44
183
59