<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15348

Description Uncharacterized protein
SequenceMSFSSDEVNFLVYRYLQESGFHHSAYTFGIESHISQSNINGALVPPAALLNILQKGLQYTEAEITIGEDGTETRLTESLSLIDAVTPDIVAARQNAHNAQKQAIKAEPGSGGEQNGVDGTTCNAAAAAPGGAATPSAPEAMDMDQSIEIPASKATVLRGHESEVFICAWNPSTDLLASGSGDSTARIWDMSDNPATTPNQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGNLLATGSYDGYARIWTTDGTLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDASTGQCTQQFSFHLAPALDVDWQTNTSFASCSTDQCIHVCKLNADKPIKSFQGHSNEVNAIKWDPQGQLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTQNPNMNLILASASFDSTVRLWDVERGMCIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQTGSLVHSYKGTGGIFEVCWNSRGTKVGASASDGSVFVLDLRKL
Length507
PositionTail
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.08
Grand average of hydropathy-0.267
Instability index36.74
Isoelectric point5.33
Molecular weight54618.35
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15348
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     339.59|      39|      39|     315|     353|       1
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  150-  189 (47.93/20.45)	.PASK.ATVLRGHESEVFICAWNPST.........dllASGSGDSTARIWD
  210-  244 (42.62/17.51)	GGAEVP..S....NKDVTSLDWNCDG.........nllATGSYDGYARI.W
  293-  327 (35.80/13.73)	......TQQFSFHLAPALDVDWQTNT..........sfASCSTDQCIHVCK
  328-  369 (60.19/27.26)	LNADKPIKSFQGHSNEVNAIKWDPQG.........qllASCSDDMTLKIWS
  370-  420 (53.29/23.43)	MKQDTCVHDLQAHSKEIYTIKWSPTGpgtqnpnmnlilASASFDSTVRLWD
  421-  462 (56.97/25.47)	VERGMCIHTLTKHTEPVYSVAFSPDG.........kflASGSFDKCVHIWS
  463-  503 (42.79/17.61)	TQTGSLVHSYKG.TGGIFEVCWNSRG.........tkvGASASDGSVFVLD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15348 with Med16 domain of Kingdom Metazoa
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