<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15341

Description Uncharacterized protein
SequenceMLCVNSALYAVIAASSSGLSGPSSLTKIWSGIVQWKPIKNASSNIMLQLNCSVFTDKNTLPHLKGETWPKTMCLYLIQKTTLKTSGVGGCFKDRKTVIFKMKACKELDELNAAWKSGMVGCLKLTPRIGCDVKIILLLYVPHKSMYLGVVPNDQGSIITKLLFYENCCGRTYLWYKGFWYRKYKESGTTIWWVCYKRSSLKCTGSIITDAGELVNTVPRHTHKMNLWQKAFNGLLRTTCYVVEKGRTYLYHEGYRHRINGRSGDKVWWICSQRDSKTCSGSLVSYNGYVKKKTAHTH
Length297
PositionUnknown
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.11
Grand average of hydropathy-0.207
Instability index26.23
Isoelectric point9.65
Molecular weight33693.09
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15341
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     281.72|      54|      74|     169|     222|       1
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   30-   63 (30.25/11.35)	......................SGIVQWKPIKN..........................ASSnimlqLNC..SVFTDKN.TL......PHL
   65-  145 (51.65/23.89)	GET..WPKTmclYLIQKttLKTSGVG...GCFKdrktvifkmkackeldelnaawksgmVGC.....LKLTPRIGCDVKiILLLYVPHKSM
  169-  222 (106.40/56.00)	GRTYLWYKG...FWYRK..YKESGTTIWWVCYK..........................RSS.....LKCTGSIITDAG.ELVNTVPRHTH
  245-  297 (93.42/48.39)	GRTYLYHEG...YRHRI..NGRSGDKVWWICSQ..........................RDS.....KTCSGSLVSYNG..YVKKKTAHTH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15341 with Med25 domain of Kingdom Metazoa
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