<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15340

Description Uncharacterized protein (Fragment)
SequenceNPAPKENKQVLKKSVEEEYRKWTSMANDNDIISHFSVPGTPLFLCLLWKMIFETNRINPVAFKILERIGARALSAHLRKFCDYLVFEVTNPAGGPHINKCVDAINDIIWKYNIVTIDRLVLCLVLRPNPDGNEGQVCLYIIQLLLLKGSELRNRAQDFIKENSPEHWKQNNWYDKHLAFHRKYPEKFAPEEAGTAYGGPIPVYLSNVCLRFLPVLDIVVHRHLEIPNVCKNLEQLLEHLGYLYKFHDRPVTFLYNTLHYYESKLRDKPMLKRKLVNAVLGSLKDVRPAGWATTETFQTFLAKSEADATAWTPDLNYYLTLVNRMVDTMTGSSHFPNTDWRFNEYPNPSAHALYVTCVELMSLPLAPNFVGNALLDVVTKGFVVIPATKIQLWINAIGLIMAALPDPYWTVIHDRLLELITNNEMTEWPYPHTPFQLFNLTITNDALLENKYSLTLALAHAIWYHAGAGQIMQIPVFVKEKLSVEIHSEVQLLYLCHLVGPFLQRFNSDLSRAVMDITITLYELLAHIDKSQQHL
Length534
PositionTail
OrganismHeliothis virescens (Tobacco budworm moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Noctuoidea> Noctuidae> Heliothinae> Heliothis.
Aromaticity0.11
Grand average of hydropathy-0.070
Instability index30.40
Isoelectric point6.75
Molecular weight61389.41
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15340
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.27|      36|      89|     309|     345|       1
---------------------------------------------------------------------------
  151-  185 (20.40/ 7.39)	...........LRNRAQDFIKENSpeHWKQNNWydkhlafhrKYPE..
  309-  345 (65.30/45.05)	AWTPDlNYYLTLVNRMVDTMTGSS..HFPNTDW.........RFNEYP
  401-  433 (62.57/38.68)	AALPD.PYWTVIHDRLLELITNNE..M...TEW.........PYPHTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.65|      21|      74|      29|      49|       2
---------------------------------------------------------------------------
   29-   49 (40.77/26.67)	NDIISHFSVPG.TPLFLCLLWK
  105-  126 (33.88/20.96)	NDIIWKYNIVTiDRLVLCLVLR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15340 with Med23 domain of Kingdom Metazoa
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