<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15339

Description Mediator of RNA polymerase II transcription subunit
SequenceMAKLRTINNMEQQQQQQQLQTALTAIKVLRSSVGQVFDSLGNGLRADHGEENKENKYLLELQELLTTVNVNLRDVEQAVSSLNPPPGAFHLASTTYLSQETTQERQALYSTLVNSYKWTDKVHEYSNVAQSILSQNSLKRSYNTTSRAKRGRIQTSNHNVPQQQVDSLIATFDRLFSDMTVSVSRPFASNAVLHVTLGHVLKGVIAFKGLMIEWVVVKGYGETMDLWTESRHKVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWFYSLNNLFSDPCKRCGLHLHSALPPTWRDFRTLEPYHQECKP
Length307
PositionTail
OrganismApis cerana cerana (Oriental honeybee)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Apoidea> Apidae> Apis.
Aromaticity0.09
Grand average of hydropathy-0.425
Instability index48.08
Isoelectric point9.03
Molecular weight34998.29
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15339
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.31|      10|      25|     112|     121|       1
---------------------------------------------------------------------------
  112-  121 (18.97/11.74)	LVNSYKWTDK
  138-  147 (17.34/10.19)	LKRSYNTTSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.40|      21|      26|     257|     278|       2
---------------------------------------------------------------------------
  257-  278 (37.13/29.26)	LAVRSFM..TW..FYSLNNlFSDPCK
  282-  306 (32.27/20.23)	LHLHSALppTWrdFRTLEP.YHQECK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.97|      37|      39|       4|      40|       3
---------------------------------------------------------------------------
    4-   40 (60.26/44.60)	LRTINNMEQQQQQQ..QLQTALTAIKVLRSSVGQVFDSL
   44-   82 (54.71/39.85)	LRADHGEENKENKYllELQELLTTVNVNLRDVEQAVSSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15339 with Med27 domain of Kingdom Metazoa
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