<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15338

Description Mediator of RNA polymerase II transcription subunit
SequenceMNIPPIQQPGAIGVGQMTQSVNAQLPQNPQQTQQTQVQQQQQQQQQQQTQEKLDNISKVKSLIVSLRDSLAIALKTAAHTLHQNSLVDVGSLKGGIDQPDHRFNKNIEEFYSICDQIELHLKTSIECTSQNSSSLRYLPVPVMPQRTDTVGTQEALTYPQFLMTVRAQVAYAREVHDTLVSAAQSIASGE
Length190
PositionTail
OrganismApis cerana cerana (Oriental honeybee)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Hymenoptera> Apocrita> Aculeata> Apoidea> Apidae> Apis.
Aromaticity0.04
Grand average of hydropathy-0.502
Instability index62.33
Isoelectric point5.93
Molecular weight21046.40
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15338
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.08|      15|      15|      19|      33|       1
---------------------------------------------------------------------------
   19-   33 (27.02/11.32)	QSVNAQLPQNPQQTQ
   36-   50 (27.06/11.35)	QVQQQQQQQQQQQTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.25|      12|      15|      97|     108|       2
---------------------------------------------------------------------------
   97-  108 (22.56/13.87)	DQPDHRFNKNIE
  115-  126 (19.69/11.45)	DQIELHLKTSIE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15338 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNIPPIQQPGAIGVGQMTQSVNAQLPQNPQQTQQTQVQQQQQQQQQQQTQEK
1
52










Molecular Recognition Features






MoRF SequenceStartStop




NANANA