<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15311

Description Uncharacterized protein
SequenceMMTPSVQVPSTSIPSTASSIDQLKQELQNAVFNADCESALRVVDEMAKICINRELLESTRVGALVNELRKKTGEEWPTFNKKCRALIKSWQKIAEVARPSSSCNSSSNNATPNLVSPATFSRKVTPCTPLNRLVTSTGLPGNKSATVSPATSSYAPSSKKEQISPLSATNANHLHKSQSVGVELLLKGEDYQGSASAKSSPALQQRNGKRKPDNISPATSIAANTPIKRTKTAVGSLVSPATPSSVSDARKAVQSTSELVAQLSMGLPQHMNIDSTIRQHEERVKREHLDEEYAMQLSSNVPGSPYVQPERKKRKYERKQKPEQPPATVAPAGGERRGGLILRFSRSSKGDSSPVIIKSELNNSREATPLGSVSPSIVAAPESNHVNGDVKKASPKTHVEDSEDVATMKAPSEVDGVDWMAQLPSLDELRQQAEEEKRRKEEAKRKIASNKVYLMKVHSRDVLALPYLESTGGDPDFIRFKYPNSSQFIFDDIGQGSKD
Length499
PositionUnknown
OrganismDiploscapter pachys
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Diploscapter.
Aromaticity0.04
Grand average of hydropathy-0.659
Instability index63.72
Isoelectric point9.33
Molecular weight54278.50
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15311
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.96|      14|      14|     136|     149|       1
---------------------------------------------------------------------------
  136-  149 (23.29/10.87)	STGLPGNKSATVSP
  152-  165 (20.41/ 8.68)	SSYAPSSKKEQISP
  188-  201 (21.26/ 9.33)	GEDYQGSASAKSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.68|      21|      22|     215|     236|       2
---------------------------------------------------------------------------
  221-  242 (29.35/12.23)	IAANTPIKRTKTAVGSlVSPAT
  377-  397 (32.34/19.60)	IVAAPESNHVNGDVKK.ASPKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.82|      51|     124|     310|     364|       3
---------------------------------------------------------------------------
  310-  364 (79.03/69.39)	ERKKRKYERKQKPeqPPATVAPAGGERRGGLILRFSRSSKGDssPVIIKSELNNS
  435-  485 (88.78/64.06)	EEKRRKEEAKRKI..ASNKVYLMKVHSRDVLALPYLESTGGD..PDFIRFKYPNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.80|      17|     125|     112|     134|       4
---------------------------------------------------------------------------
   94-  111 (23.48/20.53)	AEVARPSSSCnSSSNNAT
  118-  134 (29.32/10.71)	ATFSRKVTPC.TPLNRLV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15311 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DYQGSASAKSSPALQQRNGKRKPDNISPATSIAANTPIKRTKTAVGSLVSPATPSSVSDARKAVQSTSELVAQLSMGLPQHMNIDSTIRQHEERVKREHLDEEYAMQLSSNVPGSPYVQPERKKRKYERKQKPEQPPATVAPAGGERRGGLILRFS
2) GLPGNKSATVSPATSSYAPSSKKEQISPLSATNANHL
3) SSPVIIKSELNNSREATPLGSVSPSIVAAPESNHVNGDVKKASPKTHVEDSEDVATMKAPSEV
190
138
352
345
174
414










Molecular Recognition Features






MoRF SequenceStartStop




1) DPDFIRFKYPNSSQFIFDDIGQGSKD
2) GSPYVQPERKKRKYERKQ
3) RRGGLILRFSR
474
303
336
499
320
346