<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15295

Description Uncharacterized protein
SequenceMSGPLPPNQGYGNPGQNPQQPMMNPQGQPNPQMYYQQQGQHMMPGRQMQGQPMGMQQGQVPYSQAMHHQMQPGQYHQYQQQQQQQQQQHMHQVGIQMSQPGQMLPQQASHAMGQPGPQQFSVANPQMVNVGGQHHQMQPSPMMSGGPQSVNPGSIGPPSHQMAPGSQQMAPGSQQMAPGSQQMTTGPASIGGPHSQQMAMGPSSVQAANLGPGSQQMMNLQGPHTPQNPASHAGMHSISATNPASVQPATPASNMQPSSMQGLQRPASVQPATPVQSTPHQPMTPATGEKLMGQPQSVSSTVTGSAGQTVKEESAVIQEAPLIQDPVASVKSMILADLRRKIIDLNKKSCDVIKANASSGGVSPEQVAAYKQAHNDFMAVCDQIDSTLTLICEFRQQMSKLDKIFPPLQQGQPPQPSQPLPTDQPKYDQHMLQQINNFIEYTNSTQKMFSDTIFHVTDTVQKVRDRQDAYAKLNGADAEADGDVPMVSEVKTEDDMIE
Length498
PositionTail
OrganismDiploscapter pachys
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Diploscapter.
Aromaticity0.03
Grand average of hydropathy-0.781
Instability index66.52
Isoelectric point6.11
Molecular weight53752.77
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15295
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.39|      21|      21|     157|     177|       1
---------------------------------------------------------------------------
  155-  175 (43.16/14.01)	IGPPSHQMAPGSQQM.APGSQQ
  176-  197 (31.23/ 7.55)	MAPGSQQMTTGPASIgGPHSQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.98|      19|      21|      11|      29|       2
---------------------------------------------------------------------------
   21-   46 (28.76/ 6.41)	PMMNPQGQPnpqmyYQQQGQHmmPGR
   64-   87 (29.22/ 6.66)	QAMHHQMQPgqyhqYQQQQQQ..QQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.78|      17|      21|     231|     251|       3
---------------------------------------------------------------------------
  215-  232 (27.51/ 6.47)	QQM..MNLQGPHT..PQNP......aSH
  233-  260 (14.27/ 8.39)	AGMhsISATNPASvqPATPasnmqpsSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.78|      42|      54|     305|     347|       8
---------------------------------------------------------------------------
  305-  347 (62.01/41.13)	SAGQTVKEESAVIQEAP....LIQDPVASVKSMIlADLRRKIIDLNK
  358-  403 (65.77/39.60)	SSGGVSPEQVAAYKQAHndfmAVCDQIDSTLTLI.CEFRQQMSKLDK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15295 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DRQDAYAKLNGADAEADGDVPMVSEVKTEDDMIE
2) MSGPLPPNQGYGNPGQNPQQPMMNPQGQPNPQMYYQQQGQHMMPGRQMQGQPMGMQQGQVPYSQAMHHQMQPGQYHQYQQQQQQQQQQHMHQVGIQMSQPGQMLPQQASHAMGQPGPQQFSVANPQMVNVGGQHHQMQPSPMMSGGPQSVNPGSIGPPSHQMAPGSQQMAPGSQQMAPGSQQMTTGPASIGGPHSQQMAMGPSSVQAANLGPGSQQMMNLQGPHTPQNPASHAGMHSISATNPASVQPATPASNMQPSSMQGLQRPASVQPATPVQSTPHQPMTPATGEKLMGQPQSVSSTVTGSAGQTVKEESAVIQEAPL
465
1
498
322










Molecular Recognition Features






MoRF SequenceStartStop




1) NPQMYYQQQG
30
39