<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15286

Description Uncharacterized protein
SequenceMGRFIVLSLLLATICWVQASKKNDGANFDYFMLVRIYPDAVCRADDDTVPDSCEIPKGTPMWTLHGLWPNYADGSYPQFCKGHPRKYDEHTIDPIREMLLKFWPNYYPTKTADSFWKHEYEKHGTCSQSLPDFDSELKYFNKSLDLNALYDLEKGMREKLVPREKPYSRSLFELSLKAGVSENRRLEISCVRDKKTKQVLLADIRICLNKTSLRPIDCPVKVNQSEINAHWYVKKKMLRKTKIESRILGESPPLPGFYECPDEFYFLQTDRLKCNQYTMFHEAFFMVPSNCHRHCFIIALFYILVSLPIICLLKRAINRWNAKSGEYQIHSFDNPVATRRKMVQNNEDEAVKWARTLVAELWRNNLSTVDFSYEIRKECREETGQFASRLAEELLYSAGSLQHFHTIALDCLQLLVHSEYLSWSDYLRVISLYSRFDNQKCVFQLCQLLEDQLPSIECGLQQDDCNRLRDAIIQVAKWLLRGIEFCCQDELRIHQETGRRMMQTARVFAQDPFISRLLSISAQQMPELPTAISHLLQNAEDSEYLDHSEAEALESLSLLFDKTFKPLKFEMANVISGNYRLRCSSIRSLVSVYACFRVLTPAAEVADVIFMFSQLHKYTFENAVFDLIHATLMIQVQEQEMIEGSKFKWSIMVFLFLKLPDILNHLTNNRGVPREAIERALGRIVNEYKTLIDDIDAASKCNTLKCLILELVQNGTMDEGIAGRLNSRREDQLQATPELSYLIREMYRSTSEYNIMTLARSTSDDLVLKMLSQKQYASYLKLFSSMTGSGGVSFGANCALYARDSTLGHFTSGIASASLMLQNRIKFGNRHKIFDYTFIMLTKVSMMYDMLTFDEIVNGFGGATSPADNRDCIFYKWSVKYLKRISPPPVEVTSTENSEEEKSEAVKMETDEPENNAGEGGKEDVEMDDPQMQINRAEYREKADRWKQGNLFWVADDADFESAINLLSFVAEQIFEDYKTKEHRLNLEEMKNIINSMRNATCLLVCMIEWLDCQKTCEAKRIMARHIIAVLEEITHEDIEDGRLRFVFLMCKPILEEMIDTPIVASPIPNALMIIANRDVPKMRRNQIPDQEILRKAWFGIQRHNWASPYILRILEHANRARTHKEWIHFFVHHMLKMNCPDMMAKTIDLLSACTMLDAAGTLIRILETLVDSMIKEHADASDNMQFCHPFVMPLVALLTQVLLLSVWVAHKGSTLQQSNESAKNVSAEDGEKSDWELLQQSVEVTINRFAKLAQRGMMSLCVCVVCHTLREIAAAPDSEPKRLLTKMIPHKMLFQLARVCPASMPVELFANFCQSEEGGSLDEQLRYLCSLKKYGGF
Length1338
PositionTail
OrganismDiploscapter pachys
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Diploscapter.
Aromaticity0.09
Grand average of hydropathy-0.242
Instability index48.48
Isoelectric point6.06
Molecular weight154245.25
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
ribonuclease T2 activity	GO:0033897	IEA:InterPro
RNA binding	GO:0003723	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15286
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     257.87|      79|     214|     270|     483|       1
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   50-  137 (125.20/38.01)	PDSCEIPKGTPMWTLHGlwPNYADGSYPQFCKGHPR....KYDEhTIDPIREMLLKFWPNyyPTKTADsFwkhEYEKHGTCSQSLPDFDSEL
  308-  390 (132.67/272.08)	PIICLLKRAINRWNAKS..GEYQIHSFDNPVATRRKmvqnNEDE.AVKWARTLVAELWRN..NLSTVD.F...SYEIRKECREETGQFASRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     176.64|      58|     210|     523|     583|       7
---------------------------------------------------------------------------
  523-  583 (91.67/75.65)	QQMPELPTAISHLLQNAedSEY....LDHSEAEALeSLSLLFDKTFKP.LKFEMANVISG..NYRLRC
  734-  798 (84.97/58.93)	QATPELSYLIREMYRST..SEYnimtLARSTSDDL.VLKMLSQKQYASyLKLFSSMTGSGgvSFGANC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.56|      14|     466|     205|     223|       8
---------------------------------------------------------------------------
  205-  219 (22.43/19.25)	RIcLNKTSLRP..IDCP
  246-  261 (24.13/ 6.61)	RI.LGESPPLPgfYECP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15286 with Med24 domain of Kingdom Metazoa
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