<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15280

Description Uncharacterized protein
SequenceMTINAQRQPTLIRINKMHVNCGRRVPVLLAPWSLKGTLLPLTEKANMKMDEHNEYKEWNKFIPLEISQLEGDLQTDEDMPRMVAVEIDSIRMFYPSCLICVTLDEDGHCHSVNNPNDILPNLTPSELIVQETHAPLSMNSMSSQVLPPRIVISKRNKLLTAGGEALWSSKGLAQVTRYTVNQQNSIRRPYHERTKKNKKSESGINRTEPMPSSLESDCMSDEEKEPVVDWATCQTGDLQTGMYCSADEAMVYHYDPNNQTLPLTDDETFVCSPFTPVRTISPCVNCTWPAAPASQMVSSVFNEIFWENDDTQQLPSHTSLERKAAAADYYYNPTLPSLWEQPHYATYHNRRQNEKRRANYPPAIRFDELSPEEPGSQETIPATTSPLPEDDARRTVGREPSLLMDSIRNVTGNAKRAAASGAPEAKRRRIVKKKKKRMDNKELNWPSIEDLDIEDISHDTEEDFFCKVHFDTGRDSPDSEHSEPASPVVEEPPQNADCEEDIDDGGEGCSSISGGDMIVPMDVDEAPASTQPADSILSPPASNETPEQGNHHWNRVGTPSVGENTNYTSWQPRLAQADAHSMNQIYPTPPSVQSEAQQFSPASVPPPQQTMAHMPPCSQLYQTENDEVTEPVELVNAQEEEELSEEELPLLPINDPIKFFIDKKGPIAGILQKIERRPIHGVRENVRLPIVTRFSSKYRLSGKGAAVLPQPLDYQKMISRSEKNNSPNVQPTEHQRFFDESITVTFPDERMPGTPTQLQAMAMQYNFRPPYMTQLSTTMAPPTPQSIHPHHPGLPPNHPMQSQFMHPQMQMRMGPMGAQTPPHAAFGPPHGYMHNQGIQGMYAMQLGAGNQMSHYGGMQAPQNLNSQMQPPLYSSSSVPMRSTGFHQNGPMAPPYARQPSIIDLTGPMSGASTSNAPFQNINQHQQTTPQFPVSHHTPQTMHMVPSSSMHQRRELVPEGSSIVLALVLSDTILDLHFDTVFDACPICSCHTSIRARELGMYITPPEILRQPADQQLIGPWSGFAQQEASTPCTCGFSAVRHRYLSVCSGLFPEDAREATALDSAALSHVPSIQLDSAALVPATNISWFNPENDVHLNIVNQIRILSQTHNWGKAIHHLGSLTEQMSKALKPQEAISSDTGGNADYIVSLVDQTELLLLGNAAMELVTINMLGNRRNTNPSPNFLTYFHPWGLQIANEIREPSVSEWKYLLDNILNSVDKSMKAVRCAGSQEMGKIVEGPLTWRQFVTKNQKTTKDGAAEDELFMQEPIPYILASTDKDAIRIAPQAVQMWENLSLGPYDQPKDVLYVAVTVDCKEAVDSTKTYLENISQLYERMRLGRHVACPTGECRDGVLKSVSNPTKNKFTASPQTIDFQDMAKYVDNKNFMIKLKNFVQSMEESLAQLLIEEERLFDRGYFRELLALDWRAKRNASAALAANAEKKYYERENQKPEEMGTSSHQPPTPLQPQLNLAPQLTPAGEEKTDTLN
Length1485
PositionMiddle
OrganismDiploscapter pachys
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Diploscapter.
Aromaticity0.06
Grand average of hydropathy-0.604
Instability index61.30
Isoelectric point5.33
Molecular weight166064.10
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15280
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     193.73|      32|      32|     772|     803|       1
---------------------------------------------------------------------------
  772-  798 (49.00/19.14)	.................M.TQL....STTMAPP...TPQSIH...PH.H.PGLPPNH
  799-  831 (48.72/18.99)	PMQSQ...........fMhPQM....QMRMGPM...GAQT.P...PH.A.AFGPPHG
  832-  876 (37.64/12.92)	YMHNQgiqgmyamqlgaG.NQM....SHYGGMQ...APQNLN...SQmQ.PPLYSSS
  879-  916 (29.05/ 8.20)	PMRST.................gfhqNGPMAPPyarQPSIIDltgPM.S.GASTSNA
  917-  938 (29.32/ 8.35)	PFQN.............I.NQH....QQT.......TPQFPV...SH.HtP......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     366.83|     122|     138|     474|     611|       2
---------------------------------------------------------------------------
  474-  611 (192.51/127.81)	RDSPDS.....EHSEpaspvVEEPPQ..NADCEEDIDDggEGCSSISGGDMIvPMDVDEAPastqPADSILSppASNETPEQGNHHWNRVgtPSVGE.NTNYT...SWQPRLAQA.DAHSM..NQIYPTPPSVQ.SEAQQFSPAS..VPPPQQTM
  613-  751 (174.32/85.34)	HMPPCSqlyqtENDE.....VTEPVElvNAQEEEELSE..EELPLLPINDPI.KFFIDKKG....PIAGILQ..KIERRPIHGVRENVRL..PIVTRfSSKYRlsgKGAAVLPQPlDYQKMisRSEKNNSPNVQpTEHQRFFDESitVTFPDERM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.35|      24|      26|     251|     274|       3
---------------------------------------------------------------------------
  251-  274 (46.58/30.04)	VYHYDPN.NQTLPLTDDETFVCSPF
  277-  301 (41.77/26.04)	VRTISPCvNCTWPAAPASQMVSSVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.56|      22|      26|      95|     120|       4
---------------------------------------------------------------------------
   95-  120 (39.96/33.04)	PSCLICvtldEDGHCH.SVNN.PNDIL.P
  124-  148 (26.61/12.95)	PSELIV....QETHAPlSMNSmSSQVLpP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.49|      49|     670|     317|     392|       5
---------------------------------------------------------------------------
  166-  217 (80.72/29.27)	LWSSKGLAqvtRYTVNQQNSIRR...PYHERTKKNKKSESGINRTEPMPSS.LESD
  338-  390 (80.78/74.32)	LWEQPHYA...TYHNRRQNEKRRanyPPAIRFDELSPEEPGSQETIPATTSpLPED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15280 with Med13 domain of Kingdom Metazoa
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