<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15277

Description Uncharacterized protein
SequenceMMGKLIVLSLLLATTCWAQASRKKNDGANFDYFMLVRIYPDAVCRADDDTVPDSCEIPKGTPMWTLHGLWPNYADGSYPQFCKGHPRKYDQHAIDPIRETLLKFWPNYYPTKTADSFWKHEYEKHGTCSQSLPDFDSELKYFNKSLDLNALYDLEKGMREKLVPREKPYDRSTFELSLKAGVSENRRLEISCVRDKKTKQVLLADIRICLNKTSLRPIDCPVKVNQSAINAHWYVKKKMLRKAKIESRILGESPPLPGFYECPDEFYFLQTDRLKCNQYTMFHEAFFMAPSDCHRHCFIIALFYFYFKGRKMVQNNEDEAVKWARKLVAELWRNSLSTVDFSYEIRKECREETGQFALRLAEELLYSAGSLQHFHTIALDCLQLLVHSEYLSWPDYLRVISLYSRFDNQKCVFQLCQLLEDQLPSIECGLQQGDCDRLRDAVIQVAKWLLRGIEFCCQDELRIHQETGRRLMQTTRVFAQDPFISRLLSISAQQMPELPTTISHLLQNAEDSEYLDHSEAEALESLSLLFDKTFKPLKFEMANVISGNYRLRCSSIRSLVSVYACFRVLTPAAEVADVIFMFSQLHKYTFESAVFDLIHSTLMIQVQEQEMIEGSKFKWSIVVFLFLKLPDILSHLTKNREVPREATERALGRIVNEYKTLIDDIDAASKCNTLKCLIMELVQNGTMDEGIAGRLNSRREDQLQATPELSYLIREMYRSSSEYNMMQMARSTSDVVLKTLSQKQYASYLKLFSSMTGSGGVTFEATCALYARDSTLGHFTSGIASASLMLQNRIKFGNRHKIFDYTFIMLTKVSMIYDMLTFDEIVNGFGGATSPADNRDCIFYKWSVKYLKRISPSPIEVTSTENSEEEKSEAVKMETDEPENNASEGGKEDAEMDDPQMQINRAEYREKADRWKQGNLFWVADDADFESAINLLSFVAEQIFEDYKTKEHRLNLEEMKNIINSMRNATCLLVCMIEWLDCQKTCEAKRIMARHIIAVLEEITHEDIEDGRLRFVFLMCRPILDETIDTPIVASPIPNALMIIANRDVPKMRRNQIPDQEILRKAWFGIQRQNWASPYILRILEHANRARTHKEWIHFFVHHMLKMNCPDMMAKTIDLLSACTMLDAAGTLIRILETLVDSMIKEHADASDNMQFCHPFVMPLVALLTQVLLLSVWVAHKGPTLQQNNESAKNVSAEDGEKSDWELLEQSVEVTINRFAKLAQRGMMSLCVCVVCHTLREIAAAPDSEPKRLLTKMIPHKMLFQLARVCPASMPVELFANFCQSEEGGSLDEQLRYLCSLKKYGGF
Length1307
PositionTail
OrganismDiploscapter pachys
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Diploscapter.
Aromaticity0.09
Grand average of hydropathy-0.269
Instability index46.80
Isoelectric point5.98
Molecular weight150685.96
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
ribonuclease T2 activity	GO:0033897	IEA:InterPro
RNA binding	GO:0003723	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15277
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.43|      50|     158|    1081|    1132|       1
---------------------------------------------------------------------------
 1081- 1132 (85.05/50.76)	LRILEHANRARTHKEWIHFFVHHM...LKMNCPDMMAktIDLLSACTMLDAAGTL
 1239- 1291 (81.38/43.55)	LREIAAAPDSEPKRLLTKMIPHKMlfqLARVCPASMP..VELFANFCQSEEGGSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.26|      21|      32|      65|      92|       4
---------------------------------------------------------------------------
   65-   92 (33.31/38.61)	TLHGLWPNYadgsYP.....QFCKgHprKYDQH
  100-  125 (40.95/23.10)	TLLKFWPNY....YPtktadSFWK.H..EYEKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.34|      48|     686|     472|     524|       5
---------------------------------------------------------------------------
  472-  524 (70.45/77.47)	MQTTRVFAQdPFIS.....RLLSI.SAQQMPELPTTiSHLLQN..AEDSEyldHSEAEALE
 1154- 1209 (70.89/56.21)	MQFCHPFVM.PLVAlltqvLLLSVwVAHKGPTLQQN.NESAKNvsAEDGE...KSDWELLE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15277 with Med24 domain of Kingdom Metazoa
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