<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15266

Description Uncharacterized protein
SequenceMVRLHAIENDSSPDDENLLEYDDEGFYSNESDFLFNNNNNYHGYGLRGNGSAHLIKQGFFFGSDQEMLNAAELLERNFGVQFPEELDGTIDLQTGSANCCKFNRWGTLVAVGATDGRIYIFDFLTRGIVKTWNAHSLPITSLSWSRDGRRLLTAAADNNLMVWDVLTATKIHSIKYHHMITFAMFNPRNDKHALVLQLNSSPPLLQVFENPPYQKAIVCDVPLLSNEDTVQCVSYDRKGRYIITGTNKGKLIIYDAKTLKMVNWVKQNSTQSIKQIFVPMKCNSVLTNTGDRVIRSYNFDDLINLSKCGKGTMVEAKYKVQDMVNKAAWRAVCTDSDGYYICGATTKSHSLYVWDGSSGALIKILHGTKGETLNDVQWHPTRPVILSIAAGIISVWTQAHVENWSAFAPDFTELDENVKYVEKEGEFDLQDEDADQEEKKQDQDLDVEIDVVHLKPEEMMCSSDEVGIELA
Length471
PositionTail
OrganismDiploscapter pachys
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Diploscapter.
Aromaticity0.10
Grand average of hydropathy-0.356
Instability index30.41
Isoelectric point4.99
Molecular weight53116.17
Publications









Function






Annotated function


GO - Cellular Component
Set1C/COMPASS complex	GO:0048188	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15266
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.07|      15|      19|     290|     304|       1
---------------------------------------------------------------------------
  290-  304 (26.72/23.21)	GDRVIRSYNFDDLIN
  311-  325 (26.35/22.77)	GTMVEAKYKVQDMVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.84|      13|      17|     401|     417|       2
---------------------------------------------------------------------------
  401-  417 (15.64/21.40)	VENWSAFapDFTelDEN
  421-  433 (23.20/13.37)	VEKEGEF..DLQ..DED
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15266 with Med16 domain of Kingdom Metazoa
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