<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15264

Description Uncharacterized protein
SequenceIVNWISIYLGCSAYSRSFHFTSQMQHVLLTSCTKYGCRTETLKKHLPVSAPDGLNELQKIAVRFEEKIYTAASNQADYLRKISLKMLSMETKTQQPPGNAQVIPNQNNSAPGLPPQGSNQAQTSAIPLMSQQHAQQPNTSTSVQASSVTNIGQNLPGANQTSTMQNMSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQHQQSQQLIYHQQQMLMKQKLQQNSLMQPQQSVGRQQQQAQSSMHQQPSLQNQQPNIPLQQQQQLMGQQPNLQQNQLIGQQSGAMDMQQQQRLPVQSSNLLNVQQPQQMLNQQPMPLHQPQQLVSQGNMSGLQQQQQNQQQQQQQQQQLLGTVPNVSNMQRIHMLQTKAQQPQQQQHAQQPAMGLMRPQSQHNQLQQSQQHLISQFQSQPNQLQQQLGIQQQSSIQQRLQPSGGMLLQKNNMDQQKQIIQAQRGLQEVSSSTSADSTSQIGHAGAGEWQEEIYQMIKNLKDQYFPELSELFNKISVKLQHVDNMIPPQKPSEQYDRMKNFKTMLGRILHMLQISKSSIQPAMRDKVPQYEKQIISILSSQRTKPVQPQIQQQFQPPAGQAPDSSILQQQQTSQNLQQHDSHTNPQASLSSKSTGLQSSGVTGIQHVPLPPTTNFSATTQHQAVSNLEAAQRGNFNSLQHGLVSGALQQGTMNTQLQTSGSMLSHNPISTMQASGNSMQPNASSLQQQQQDHHLMQSEQMKRQMYQYQQKQQMLQQQLPVQQQQQKQQQVQMQVPQLHAGNDVRQGTAMKPGIYQHHLSQRSNYYQQQLKQSGDFPISSPNLQASSPQISHHSPQIDKHNQLSSQIKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSIISSLSNTGQTGHQQTSLAPQTKSMSLNTPGISASPLLAEFTSVDGSQANMPTQAPTKSNAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSTGSVDDSFKQTFSADTPDVQSTATSRANKRQKVEVNHALLEEIQAINQELIDTELNVCEEDADSFAAASEGTVIKCTYTPVAVSPSLKSMLASAQTVSFLNKARALDIVDISAHFFLLECGRV
Length1144
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.762
Instability index64.86
Isoelectric point9.37
Molecular weight126593.45
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15264
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     339.08|      51|      51|     210|     260|       3
---------------------------------------------------------------------------
   85-  130 (41.78/ 6.58)	........KMLsMETKTQQP.....PGnaQVI.PNQNNS...A.PG...LPPQG.SNQAQTSAIPLMS
  131-  181 (48.72/ 9.15)	Q...QhaQQPN.TSTSVQASSVT.NIG..QNLpGANQTS...TMQN...MSVMP...QNTMNN.GLAQ
  209-  259 (96.67/26.91)	H...Q..QQML.MKQKLQQNSLM.QPQ..QSV.GRQQQQ...AQSS...MHQQP.SLQNQQPNIPLQQ
  260-  317 (58.04/12.60)	Q...Q..QLMG.QQPNLQQNQLIgQQS..GAM.DMQQQQrlpVQSSnllNVQQPqQMLNQQP.MPLHQ
  414-  464 (48.40/ 9.03)	QlgiQ..QQSS.IQQRLQPSGGM.LLQ..KNN.MDQQKQ...I......IQAQR.GLQEVSSSTSADS
  715-  743 (45.47/ 7.95)	Q...Q............QDHHLM.QSE..Q.M.KRQ.............MY......QYQQKQQMLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     348.02|      49|      51|     565|     613|       5
---------------------------------------------------------------------------
  517-  556 (36.19/ 8.23)	........KPSeQYD....RMKNFKT.M.................L...........G.................................R.....ILHMLQISKsSIQPAM...RDKVPQ
  565-  613 (88.91/31.48)	LSSQ.RT.KPV.QPQ....IQQQFQP.P.................A...........G.................................QAPDSSILQQQQTSQ.NLQQHD...SHTNPQ
  616-  684 (49.71/14.19)	LSSK.ST..GL.QSSgvtgIQHVPLP.PttnfsattqhqavsnleA...........A.................................QRGNFNSLQHGLVSG.ALQQGT...MNTQLQ
  690-  763 (42.39/10.96)	LSHN.PI.STM.QAS.....GNSMQP.N.................A...........SslqqqqqdhhlmqseqmkrqmyqyqqkqqmlqqQLP...VQQQQQKQQ.QVQMQ.......VPQ
  784-  822 (49.50/14.10)	HLSQ.RS.NYY.QQQ....LKQ.......................S...........G.................................DFPIS........SP.NLQASSpqiSHHSPQ
  829-  889 (46.49/12.77)	LSSQiKTgTPL.HSA.....NSPFVPsP.................SpsiapspipvdS.................................DKPHSIISSLSNTGQ.TGHQQT...S.LAPQ
  913-  945 (34.84/ 7.63)	DGSQ.AN.MPT.QAP....TKSN......................A...........A.................................ERPMDRLLKALRTTQ................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.73|      18|      20|    1001|    1019|       7
---------------------------------------------------------------------------
 1001- 1019 (26.47/21.71)	GSgASKKMKRDTSAMPLNV
 1023- 1040 (30.26/19.55)	GS.VDDSFKQTFSADTPDV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.23|      11|      20|      50|      60|       9
---------------------------------------------------------------------------
   50-   60 (18.81/10.74)	APDGLNELQKI
   72-   82 (18.42/10.36)	ASNQADYLRKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15264 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASPLLAEFTSVDGSQANMPTQAPTKSNAAERPMDRLLKALRTTQRESLNAAVSD
2) KQKLQQNSLMQPQQSVGRQQQQAQSSMHQQPSLQNQQPNIPLQQQQQLMGQQPNLQQNQLIGQQSGAMDMQQQQRLPVQSSNLLNVQQPQQMLNQQPMPLHQPQQLVSQGNMSGLQQQQQNQQQ
3) MLSMETKTQQPPGNAQVIPNQNNSAPGLPPQGSNQAQTSAIPLMSQQHAQQPNTSTSVQASSVTNIGQNLPGANQTSTMQNMSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQHQQSQQLIYHQQQM
4) PVQPQIQQQFQPPAGQAPDSSILQQQQTSQNLQQHDSHTNPQASLSSKSTGLQSSGVTGIQHVPLPPTTNFSATTQHQAVSNLEAAQRGNFNSLQHGLVSGALQQGTMNTQLQTSGSMLSHNPISTMQASGNSMQPNASSLQQQQQDHHLMQSEQMKRQMYQYQQKQQMLQQQLPVQQQQQKQQQVQMQVPQLHAGNDVRQGTAMKPGIYQHHLSQRSNYYQQQLKQSGDFPISSPNLQASSPQISHHSPQIDKHNQLSSQIKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSIISSLSNTGQTGHQQTSLAPQTKSMSLNTPGI
5) QQQQQQLLGTVPNVSNMQRIHMLQTKAQQPQQQQHAQQPAMGLMRPQSQHNQLQQSQQHLISQFQ
6) RLQPSGGMLLQKNNMDQQKQIIQAQRGLQEVSSSTSADSTSQIGHAG
902
216
86
572
341
426
955
339
213
900
405
472










Molecular Recognition Features






MoRF SequenceStartStop




NANANA