<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15263

Description Uncharacterized protein
SequenceMDANWRPTQGSDPAAGAADPTAPPPPAAGDWRAQLQPEARGRIVNKITETLKKHLPVSAPDGLNELQKIAVRFEEKIYTAASNQADYLRKISLKMLSMETKTQQPPGNAQVIPNQNNSAPGLPPQGSNQAQTSAIPLMSQQHAQQPNTSTSVQASSVTNIGQNLPGANQTSTMQNMSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQHQQSQQLIYHQQQMLMKQKLQQNSLMQPQQSVGRQQQQAQSSMHQQPSLQNQQPNIPLQQQQQLMGQQPNLQQNQLIGQQSGAMDMQQQQRLPVQSSNLLNVQQPQQMLNQQPMPLHQPQQLVSQGNMSGLQQQQQNQQQQQQQQQQLLGTVPNVSNMQRIHMLQTKAQQPQQQQHAQQPAMGLMRPQSQHNQLQQSQQHLISQFQSQPNQLQQQLGIQQQSSIQQRLQPSGGMLLQKNNMDQQKQIIQAQRGLQEVSSSTSADSTSQIGHAGAGEWQEEIYQMIKNLKDQYFPELSELFNKISVKLQHVDNMIPPQKPSEQYDRMKNFKTMLGRILHMLQISKSSIQPAMRDKVPQYEKQIISILSSQRTKPVQPQIQQQFQPPAGQAPDSSILQQQQTSQNLQQHDSHTNPQASLSSKSTGLQSSGVTGIQHVPLPPTTNFSATTQHQAVSNLEAAQRGNFNSLQHGLVSGALQQGTMNTQLQTSGSMLSHNPISTMQASGNSMQPNASSLQQQQQDHHLMQSEQMKRQMYQYQQKQQMLQQQLPVQQQQQKQQQVQMQVPQLHAGNDVRQGTAMKPGIYQHHLSQRSNYYQQQLKQSGDFPISSPNLQASSPQISHHSPQIDKHNQLSSQIKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSIISSLSNTGQTGHQQTSLAPQTKSMSLNTPGISASPLLAEFTSVDGSQANMPTQAPTKSNAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSTGSVDDSFKQTFSADTPDVQSTATSRANKRQKVEVNHALLEEIQAINQELIDTELNVCEEDADSFAAASEGTVIKCTYTPVAVSPSLKSMLASAQTVSFLNKARALDIVDISAHFFLLECGRV
Length1153
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.796
Instability index65.00
Isoelectric point9.36
Molecular weight127111.78
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15263
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     426.72|      56|      56|     228|     283|       1
---------------------------------------------------------------------------
  173-  227 (57.57/10.15)	MQNMSVM.PQNTMnnGLAQGTS.QDIYA.AQR......Q..MA.....GRQQH....QQ.SQQ...LI.....yHQ...QQMLMKQK
  228-  283 (108.90/26.36)	LQQNSLMQPQQSV..GRQQQQA.QSSMH.QQP......S..LQ.....NQQPNI.PLQQ.QQQ...LM......GQ...QPNLQQNQ
  326-  367 (55.49/ 9.50)	.......QPQQLV.....SQGN.MSGLQ.QQQ..........Q.....NQQQQ...QQQ.QQQ...LL......GT...VPNVSNMQ
  369-  419 (48.90/ 7.42)	IH...MLQTKAQQ..PQQQQHAqQPAMGlMRP......Q..SQ.....HNQ.....LQQsQQH...LI......SQfqsQP....NQ
  484-  533 (46.22/ 6.57)	EWQEEIYQMIKNL..KDQYFPE.LSELF.NKI......SvkLQ.....HVDNMI.P..................PQ...KPSEQYDR
  678-  747 (48.51/ 7.30)	LVSGAL..QQGTM..NTQLQTS.GSMLS.HNPistmqaS..GN.....SMQPNAsSLQQ.QQQdhhLMqseqmkRQ...MYQYQQKQ
  750-  804 (61.13/11.28)	LQQ......QLPV..QQQQQKQ.QQVQM.QVP......Q..LHagndvRQGTAM.KPGI.YQH...HL......SQ...RSNYYQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     222.86|      49|     153|     426|     474|       2
---------------------------------------------------------------------------
  426-  474 (82.76/30.45)	IQQQ..SSIQQRLQPSGGMLLQKNNMDQ.QKQIIQAQRG....LQEVSSST......SADST
  550-  579 (37.14/ 8.91)	ISK...SSI....QPA.....MRDKVPQyEKQII..........S.ILSS.........QRT
  580-  630 (68.41/23.68)	KPVQ..PQIQQQFQPPAGQAPDSSILQQ.Q....QTSQN....LQQHDSHTnpqaslSSKST
  632-  675 (34.55/ 7.68)	LQSSgvTGIQHVPLPPTTNFSATTQHQA.VSNLEAAQRGnfnsLQ.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.16|      41|      43|     825|     867|       3
---------------------------------------------------------------------------
  816-  853 (55.57/32.18)	PNLQASS...PQI.......SHHSPqIDkHNQLSSQ..IKTGTPLHS..ANS
  854-  894 (63.33/29.56)	PFVPSPS...PSIAPSPipVDSDKP....HSIISSL..SNTGQTGHQ..QTS
  897-  941 (43.26/17.70)	PQTKSMSlntPGISASP.lLAEFTS.VD.....GSQanMPTQAPTKSnaAER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15263 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASPLLAEFTSVDGSQANMPTQAPTKSNAAERPMDRLLKALRTTQRESLNAAVSD
2) KQKLQQNSLMQPQQSVGRQQQQAQSSMHQQPSLQNQQPNIPLQQQQQLMGQQPNLQQNQLIGQQSGAMDMQQQQRLPVQSSNLLNVQQPQQMLNQQPMPLHQPQQLVSQGNMSGLQQQQQNQQQ
3) MDANWRPTQGSDPAAGAADPTAPPPPAAGDWRAQLQPEARGRIVNKITETLKKHLPVSAPDGLNEL
4) PVQPQIQQQFQPPAGQAPDSSILQQQQTSQNLQQHDSHTNPQASLSSKSTGLQSSGVTGIQHVPLPPTTNFSATTQHQAVSNLEAAQRGNFNSLQHGLVSGALQQGTMNTQLQTSGSMLSHNPISTMQASGNSMQPNASSLQQQQQDHHLMQSEQMKRQMYQYQQKQQMLQQQLPVQQQQQKQQQVQMQVPQLHAGNDVRQGTAMKPGIYQHHLSQRSNYYQQQLKQSGDFPISSPNLQASSPQISHHSPQIDKHNQLSSQIKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSIISSLSNTGQTGHQQTSLAPQTKSMSLNTPGI
5) QQQQQQLLGTVPNVSNMQRIHMLQTKAQQPQQQQHAQQPAMGLMRPQSQHNQLQQSQQHLISQFQ
6) RKISLKMLSMETKTQQPPGNAQVIPNQNNSAPGLPPQGSNQAQTSAIPLMSQQHAQQPNTSTSVQASSVTNIGQNLPGANQTSTMQNMSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQHQQSQQLIYHQQQM
7) RLQPSGGMLLQKNNMDQQKQIIQAQRGLQEVSSSTSADSTSQIGHAG
911
225
1
581
350
89
435
964
348
66
909
414
222
481










Molecular Recognition Features






MoRF SequenceStartStop




1) DWRAQLQP
30
37