<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15261

Description Uncharacterized protein
SequenceMDANWRPTQGSDPAAGAADPTAPPPPAAGDWRAQLQPEARGRIVNKITETLKKHLPVSAPDGLNELQKIAVRFEEKIYTAASNQADYLRKISLKMLSMETKTQQPPGNAQVIPNQNNSAPGLPPQGSNQAQTSAIPLMSQQHAQQPNTSTSVQASSVTNIGQNLPGANQTSTMQNMSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQHQQSQQLIYHQQQMLMKQKLQQNSLMQPQQSVGRQQQQAQSSMHQQPSLQNQQPNIPLQQQQQLMGQQPNLQQNQLIGQQSGAMDMQQQQRLPVQSSNLLNVQQPQQMLNQQPMPLHQPQQLVSQGNMSGLQQQQQNQQQQQQQQQQLLGTVPNVSNMQRIHMLQTKAQQPQQQQHAQQPAMGLMRPQSQHNQLQQSQQHLISQFQSQPNQLQQQLGIQQQSSIQQRLQPSGGMLLQKNNMDQQKQIIQAQRGLQEVSSSTSADSTSQIGHAGAGEWQEEIYQMIKNLKDQYFPELSELFNKISVKLQHVDNMIPPQKPSEQYDRMKNFKTMLGRILHMLQISKSSIQPAMRDKVPQYEKQIISILSSQRTKPVQPQIQQQFQPPAGQAPDSSILQQQQTSQNLQQHDSHTNPQASLSSKSTGLQSSGVTGIQHVPLPPTTNFSATTQHQAVSNLEAAQRGNFNSLQHGLVSGALQQGTMNTQLQTSGSMLSHNPISTMQASGNSMQPNASSLQQQQQDHHLMQSEQMKRQMYQYQQKQQMLQQQLPVQQQQQKQQQVQMQVPQLHAGNDVRQGTAMKPGIYQHHLSQRSNYYQQQLKQSGDFPISSPNLQASSPQISHHSPQIDKHNQLSSQIKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSIISSLSNTGQTGHQQTSLAPQTKSMSLNTPGISASPLLAEFTSVDGSQANMPTQAPTKSNAAERPMDRLLKALRTTQRESLNAAVSDIRSVVSMMDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITNDGSGASKKMKRDTSAMPLNVSSTGSVDDSFKQTFSADTPDVQSTATSRANKRQKVEVNHALLEEIQAINQELIDTELNVCEEDADSFAAASEGTVIKCTYTPVAVSPSLKSMLASAQTSLIMPLRLLVPAGYPKCASPVILDKFPDEQRNSDDLSSKARSKFGVSLRGLAEPMSLREIARAWDASARGAIVECAQKTGGGSFSSSYGCWEACVGA
Length1223
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.774
Instability index65.72
Isoelectric point9.31
Molecular weight134384.95
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15261
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.82|      20|      21|     194|     214|       1
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  193-  213 (28.03/ 9.52)	S.......QDIyAAQRQMAGRQQHQQSQ
  320-  346 (28.79/ 6.43)	QpmplhqpQQL.VSQGNMSGLQQQQQNQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.82|      18|      21|     396|     414|       2
---------------------------------------------------------------------------
  377-  402 (25.80/ 6.76)	QQPQQQQHAQQpamglmrpQSQHNQL
  403-  420 (33.02/ 8.80)	QQSQQHLISQF........QSQPNQL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.41|      19|      21|     235|     255|       3
---------------------------------------------------------------------------
  235-  255 (30.35/11.26)	QPQQ.SVGRQQQqaQSSMHQQP
  258-  277 (30.06/ 6.98)	QNQQpNIPLQQQ..QQLMGQQP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     489.66|      66|      66|     721|     786|       4
---------------------------------------------------------------------------
  295-  394 (45.75/ 7.77)	...Q...QQQRLPVQSS....NLLNVQQPQQMLN.......QqPMPLhqpqqlvsqgnmsglqqqqqnqQQQ..QQQQQQLLGT.VPNVSNM.....QR....IHmlQT...KAqqpqqqqhaqqpamglMR
  421-  481 (63.04/13.53)	.QQQlgiQQQSSIQQRLQPSGGM..LLQKNNMDQ.......Q.KQII......................QAQ..RGLQ.....E.VSSSTSA.....DS....TS..QI...GH................AG
  482-  521 (41.52/ 6.36)	AGEW...QEEI..............YQMIKNLKD.......Q.YFPE......................LSE..LFNKISVKLQ.....HVD.....N................................M.
  545-  595 (56.12/11.22)	LHML...QISKSSIQ.PAMRDKVPQYE..KQII........S.ILSS......................QRT..KPVQPQIQQQ.F.QPPAG........................................
  603-  682 (58.05/11.86)	LQQQ...QTSQNLQQHDSHTNPQASLSSKSTGLQssgvtgiQ.HVPL......................PPT..TNFSATTQHQaVSNLEAAqrgnfNS....LQ..HGlvsGA..................
  683-  715 (47.32/ 8.29)	LQQ............G.TMNTQL...QTSGSMLS.......H.N.PI......................ST...........MQ......AS................G...NS................MQ
  721-  786 (117.34/31.63)	LQQQ...QQDHHLMQSEQMKRQMYQYQQKQQMLQ.......Q.QLPV......................QQQ..QQKQQQVQMQ.VPQLHAG.....ND....VR..QG...TA................MK
  792-  849 (60.52/12.69)	H..........HLSQ.....RSNYYQQQLKQ..S.......G.DFPI......................SSPnlQASSPQISHH.SPQIDKH.....NQlssqIK..TG...TP................LH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.12|      49|      66|      60|     125|       5
---------------------------------------------------------------------------
   63-  122 (72.16/70.80)	LNELQKIAV.....RFEEKIYTAASNQADYLRKISlkmlsmetktQQPPGNAQ........VIPnQNNSAPGL
  127-  188 (71.96/32.75)	SNQAQTSAIplmsqQHAQQPNTSTSVQASSVTNIG..........QNLPGANQtstmqnmsVMP.QNTMNNGL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     300.50|      82|     105|     984|    1072|       6
---------------------------------------------------------------------------
  900-  949 (58.33/30.57)	...............................KSM..SLNTpgiS.ASPL.LAEFTSVDGS.....QANMP.TQAPTKSNAAE.RP...MDR.LLKA
  984- 1072 (121.29/95.00)	SRAAVGEDLVaMtKCrlqarNFITNDGSGASKKM..KRDT...S.AMPLNVSSTGSVDDSFKQTFSADTPDVQSTATSRANK.RQKVEVNHALLEE
 1094- 1179 (120.88/76.16)	SFAAASEGTV.I.KC.....TYTPVAVSPSLKSMlaSAQT...SlIMPLRLLVPAGYPKCASPVILDKFPDEQRNSDDLSSKaRSKFGVSLRGLAE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15261 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASPLLAEFTSVDGSQANMPTQAPTKSNAAERPMDRLLKALRTTQRESLNAAVSD
2) KQKLQQNSLMQPQQSVGRQQQQAQSSMHQQPSLQNQQPNIPLQQQQQLMGQQPNLQQNQLIGQQSGAMDMQQQQRLPVQSSNLLNVQQPQQMLNQQPMPLHQPQQLVSQGNMSGLQQQQQNQQQ
3) MDANWRPTQGSDPAAGAADPTAPPPPAAGDWRAQLQPEARGRIVNKITETLKKHLPVSAPDGLNEL
4) PVQPQIQQQFQPPAGQAPDSSILQQQQTSQNLQQHDSHTNPQASLSSKSTGLQSSGVTGIQHVPLPPTTNFSATTQHQAVSNLEAAQRGNFNSLQHGLVSGALQQGTMNTQLQTSGSMLSHNPISTMQASGNSMQPNASSLQQQQQDHHLMQSEQMKRQMYQYQQKQQMLQQQLPVQQQQQKQQQVQMQVPQLHAGNDVRQGTAMKPGIYQHHLSQRSNYYQQQLKQSGDFPISSPNLQASSPQISHHSPQIDKHNQLSSQIKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSIISSLSNTGQTGHQQTSLAPQTKSMSLNTPGI
5) QQQQQQLLGTVPNVSNMQRIHMLQTKAQQPQQQQHAQQPAMGLMRPQSQHNQLQQSQQHLISQFQ
6) RKISLKMLSMETKTQQPPGNAQVIPNQNNSAPGLPPQGSNQAQTSAIPLMSQQHAQQPNTSTSVQASSVTNIGQNLPGANQTSTMQNMSVMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQHQQSQQLIYHQQQM
7) RLQPSGGMLLQKNNMDQQKQIIQAQRGLQEVSSSTSADSTSQIGHAG
911
225
1
581
350
89
435
964
348
66
909
414
222
481










Molecular Recognition Features






MoRF SequenceStartStop




1) DWRAQLQPEA
30
39