<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15226

Description Uncharacterized protein
SequenceMASSGDPLAVAVAVRRDGRASRRAARWAAAAPGRVALVHVIPPLAFVPTPTGEQVPVERMAAGVVEMFSQDRRARAQDVFLPFRRLFGSKTVETVVLEGHSVAEALARYAAESGVRNLVLGSATLSWFRRILWLQDLPNTVLKAMPCSCNVFIVSRHRLTIKLVNQTQADNSNTYLKIESVSHREFALRLRSQLQDKQSLHDLPNVNTPKSSEVTSSDSSSQARSSLSFSASAAQSSESLRRRLFGRVCRKTPGRTGDTDFDAIGQLKEFPCVSLSSTEESRRIDEVAKPRKEYQDTPMMYVEACENHVHAKKKIQVLSNGCSEDLQKVQDALQQEDFFKQKAAPEKNKHFRATEEAEMVKKAFTREAYSKHNAETVTNMATTEKAKVLGALLSTGKSCRRYSRHEIELATENFSDAKKIGEGGYGIVYRCTLDHTEVAVKVIQQDSRGKIDEFFKEVDILGRLHHPNLVLLLGFCPEIGCLVYEYMENGSLEDQLIDNEGRQPLHWSLRFQIICEVARGLAFLHGTKPEPIVHRDLKPGNILLDKNYVSKIGDVGFAKLISDLAPDGFTEYRDDTVIAGTMYYMDPEYQLTGTVRPKSDLFALGIIILQLLTGKRPNGLILSAEEAIRKGTFPDILDISLNDWPIAEAEMLAKLGLHCTALRCRDRPDLEQEVLPELENILSRVTSSRKFRSPNAVVPSHFICPISQEIMDDPSVAADGHTYERRAIEAWFEKHTISPITKGMLPSLTIIPSHSLHEAIQQWKRSSR
Length768
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.329
Instability index52.08
Isoelectric point8.09
Molecular weight85875.03
Publications
PubMed=23075845

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15226
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.05|      25|      38|     218|     242|       1
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  179-  202 (35.44/20.20)	ESVSHREFAL.RLR.SQLQDKQSLHD
  218-  242 (38.05/22.19)	DSSSQARSSL.SFSASAAQSSESLRR
  258-  283 (34.56/19.52)	DTDFDAIGQLkEFPCVSLSSTEESRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.82|      27|      49|     469|     500|       2
---------------------------------------------------------------------------
  469-  500 (37.47/37.91)	LVLLLGFCPEIgcLVYEYMENGSLedqLIDNE
  521-  547 (48.35/30.25)	LAFLHGTKPEP..IVHRDLKPGNI...LLDKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.76|      22|      43|     397|     421|       5
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  397-  421 (33.79/28.03)	KSCRRYSRHEIElatENFSDAKKIG
  441-  462 (36.97/22.67)	KVIQQDSRGKID...EFFKEVDILG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.39|      25|      48|     557|     604|       6
---------------------------------------------------------------------------
  557-  581 (41.24/59.86)	FAKLISDLAPDGFTEYRDDTVIAGT
  608-  632 (39.15/12.85)	ILQLLTGKRPNGLILSAEEAIRKGT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15226 with Med32 domain of Kingdom Viridiplantae
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