<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15213

Description Uncharacterized protein
SequenceMDANWRPTQGSDPAAAAAGVDPNAPPSTGGDWRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLMSQQQARQPNSSTSVQASSLANIGQSLPGVNQTSTMQNASGMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPAQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQSSMHQQPSLQSQQPNIPLQQQPQQLMGQQPNLQQNQLIGQQNGAMDMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSGLQQQQQNQQPQQLLGTVPNVSNMQRMHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQVQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAHRGLQEVSSSTSADSTAQTGHAGTGDWQEEIYQMIKSLKDLYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKTAVQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPVGQAPNSSISQQQQPSQTLQQHDSHANPQASLSSMSTGLQSSSAAGIQHVPAPSTKNFSAPTQQNGANIQHQADSNLEAAQGGNFNSSQHGSVSSALQQGSTVLMQGTMNAQLQTTSSMLSHNSMSTMQRNGNSMQANASSLQQLKQQHQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPIQQQLQKQQQVQIQVPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRNNYYHQQLKGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSNISSLTNTGQAGHQQTSLVPQAQSIAVNTPGISASPLLAEFTSVDGSQANMPSQAPTKSSAIERPLDRLLKALRTTQRESLNAAVSDIRCVVSMIDRIAGSAPGNGSRAAVGEDLVAMTRCRLQARNFITNDGNGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTASSQAKWQKTEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMVSF
Length1220
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.777
Instability index70.70
Isoelectric point9.27
Molecular weight134223.58
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP15213
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.67|      18|      20|     463|     481|       1
---------------------------------------------------------------------------
  334-  352 (23.81/ 6.38)	NIPLQQQPQQLMGQQpNLQ
  466-  483 (33.86/ 8.70)	HNQLQQSQQHLMSQF.QSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     686.58|      76|      77|     180|     255|       2
---------------------------------------------------------------------------
  123-  178 (50.77/ 9.12)	L..............P...........PQG.SN..................Q...AQTSVIPL.MS.QQQARQ..PNSS......T..........S....VQA.SS..LANigqslPGVNQT.STMQNA........S......
  180-  255 (138.08/44.91)	M..............PQNTMNNGL...AQGTSQ..................DIYAAQRQMAGR.QQ.QQQSQQLIYHQQ.QMLMKQ..........K....LQQ.NS..LMQ.....PHIQQQ.QSLLQP........TQMQSSQ
  258-  308 (53.28/10.15)	M..............MQ..MSSGL.............................HPAQSTVP......QTQP..........MAMQS..........AtqsgIQQ.NQ..L.N.....S.VQQSvQSLLQQ........PQ.....
  394-  453 (86.22/23.65)	M..............P............LHQPQ..................QL.GSQSNMSGL.QQ.QQQNQQ....PQ.QLL..G..........T....VPN.VS..NMQ.....RMHMLQ.TKVQQP........QQQQHAQ
  455-  518 (59.72/12.79)	P..............PM.....GL...MQPQSQhnqlqqsqqhlmsqfqsqP.NQVQQQL.G...............MQ.QSSMQQ..........R....LQT.SG..GM...............LLQQ........NNM.DQQ
  521-  604 (57.42/11.85)	F..............IQA..HRGLqevSSSTSA..................D.STAQTGHAGTgDW.QEEIYQMIKSLK.DLYFAElselfnkisvK....LQHvDS..IIP.....P....Q.KPSEQY........DRMKSFK
  606-  702 (72.81/18.16)	MlerilqmlqisktaVQPAMRDKV...PQYEKQ................iiSILNSQRRKPVQ.PQiQQQFQPPVGQAP.NSSISQ..........Q.....QQ.PS....Q.....T.LQQH.DSHANPqaslssmsTGLQSSS
  709-  776 (75.44/19.23)	V..............PAPSTKN.F...SAPTQQ..................NGANIQHQADSN.LE.AAQGGNF.NSSQ.HGSVSS..........A....LQQ.GStvLMQ.....GTMNAQ....LQT........T.....S
  779-  848 (92.84/26.37)	L..............SHNSMSTMQ...RNGNSM..................QANASSLQ..QL.KQ.QHQDHQMMQSQQmKRQMFQ..........Q....YQQ.KQ..QM........LQQQ.LPIQQ..........QLQKQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     124.87|      21|      70|     900|     920|       3
---------------------------------------------------------------------------
  900-  920 (39.84/17.86)	ISSPQNNLQASSPQISHHSPQ
  927-  944 (30.17/11.61)	LPS...QVKTGTPLHSANSPF
  945-  957 (23.51/ 7.29)	VPSP.......SPSIA.PSPI
  968-  987 (31.34/12.36)	ISSLTNTGQAGHQQTS.LVPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.82|      15|      26|    1070|    1084|       4
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 1070- 1084 (25.26/20.00)	GNGSRAAVGEDLVAM
 1099- 1113 (25.56/20.34)	GNGASKKMKRDTSAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.59|      11|      21|       2|      12|       5
---------------------------------------------------------------------------
    2-   12 (22.96/11.77)	DANWRPTQGSD
   21-   31 (22.63/11.49)	DPNAPPSTGGD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15213 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPAQSTVPQTQPMAMQSATQSGIQQNQ
2) LQKQQQVQIQVPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRNNYYHQQLKGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSNISSLTNTGQAGHQQTSLVPQAQSIA
3) MDANWRPTQGSDPAAAAAGVDPNAPPSTGGDWRAQLQPEARSRIVNKI
4) PLLAEFTSVDGSQANMPSQAPTKSSAIERPLDRLLKALRT
5) PVQPQIQQQFQPPVGQAPNSSISQQQQPSQTLQQHDSHANPQASLSSMSTGLQSSSAAGIQHVPAPSTKNFSAPTQQNGANIQHQADSNLEAAQGGNFNSSQHGSVSSALQQGSTVLMQGTMNAQLQTTSSMLSHNSMSTMQRNGNSMQANASSLQQLKQQHQDHQMMQSQQMKRQMFQQYQQKQQ
6) RKISLKMLSMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLMSQQQARQPNSSTSVQASSLANIGQSLPGVNQTSTMQNASGMPQNTMNNGLAQGTSQDIYAAQRQMAG
7) SVQSLLQQPQQSVGRQQQQAQSSMHQQPSLQSQQPNIPLQQQPQQLMGQQPNLQQNQLIGQQNGAMDMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSGLQQQQQNQQPQQLLGTVPNVSNMQRMHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQVQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAHRGLQEVSSSTSADSTAQTGHAGTGD
226
844
1
1002
647
90
299
292
992
48
1041
832
206
550










Molecular Recognition Features






MoRF SequenceStartStop




NANANA