<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15212

Description Uncharacterized protein
SequenceMSQQQARQPNSSTSVQASSLANIGQSLPGVNQTSTMQNASGMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQSSMHQQPSLQSQQPNIPLQQQPQQLMGQQPNLQQNQLIGQQNGAMDMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSGLQQQQQNQQPQQLLGTVPNVSNMQRMHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQVQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAHRGLQEVSSSTSADSTAQTGHAGTGDWQEEIYQMIKSLKDLYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKTAVQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPVGQAPNSSISQQQQPSQTLQQHDSHANPQASLSSMSTGLQSSSAAGIQHVPAPSTKNFSAPTQQNGANIQHQADSNLEAAQGGNFNSSQHGSVSSALQQGSTVLMQGTMNAQLQTTSSMLSHNSMSTMQRNGNSMQANASSLQQLKQQHQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPIQQQLQKQQQVQIQVPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRNNYYHQQLKGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSNISSLTNTGQAGHQQTSLVPQAQSIAVNTPGISASPLLAEFTSVDGSQANMPSQAPTKSSAIERPLDRLLKALRTTQRESLNAAVSDIRCVVSMIDRIAGSAPGNGSRAAVGEDLVAMTRCRLQARNFITNDGNGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTASSQAKWQKTEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMSPITPLRLLVPARYPKCSPVLLDKFPDEQRNSDDLSMKANSKFGILLRGLAEPMSLREIARTWDACARKAIAEYAQKTGGGSFSSSYGCWESCVGA
Length1156
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.762
Instability index73.32
Isoelectric point9.20
Molecular weight127483.24
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15212
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     737.28|      77|      77|     117|     193|       2
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   32-  117 (78.61/15.58)	QTS..TM....QNA...SGMPQ..NTMNN......glAQGTSQDI......Y........A........................AQRQMAGRQ.QQQQSQQLiyH..QQ....QMLMKQklqqnslmQP...H..IQQQQsllQ.PTQMQSSQ..
  118-  193 (136.12/33.81)	.QSMMAM....QSATQ.SGIQQ..NQLNS........VQQSVQSL......L........Q........................QPQQSVGRQ.QQQAQSSM..H..QQ....PSLQSQ........QP...N..IPLQQ...Q.PQQLMGQQPN
  203-  272 (93.88/20.43)	QNGAMDM....QQQQR.LPVQS..NNLLN........VQQTQQMLnqtsmpL........H........................QPQQ.LG......SQSNM...........SGLQQQ........QQ...N......Q...Q.PQQLLGTVPN
  276-  372 (71.12/13.21)	MQRMHML....QTKVQ....QP..QQQQH........AQQPPMGL......M........QpqsqhnqlqqsqqhlmsqfqsqpnQVQQQLGMQ.QSSMQQRL..Q..TS....GGMLLQ........QN...N..MDQQK...QfIQAHRGLQ..
  460-  525 (64.05/10.97)	..SKTAV....QPAMR.DKVPQyeKQIIS........ILNS............................................QRRKPVQPQiQQQF..........Q....PPV.GQ........AP...NssISQQQ...Q.PSQTL.QQHD
  531-  612 (71.29/13.26)	QASLSSMstglQSSSA.AGIQ......HV........PAPSTKNF......S........A........................PTQQNGANI.QHQADSNL..EaaQG....GNFNSS........QHgsvS..SALQQ...G.STVLMQGTMN
  615-  682 (83.66/17.19)	LQTTSSM....LSHNSmSTMQR..NG.NS........MQANASSL......Q........Q........................LKQQHQDHQ.MMQSQ.QM..K..RQ....MF............QQ.........YQ...Q.KQQMLQQQLP
  685-  763 (77.19/15.13)	QQ....L....QKQQQ.VQIQV..PQLHAgndvnelkVRQGTAMK......P........G........................MYQQHLG.....QRNNYY..H..QQlkgaFPISSP........QN...N....LQA...S.SPQISHHSPQ
  766-  839 (61.35/10.11)	QHNPLPS....QVKTG.TPLHS..ANSPF........VPSPSPSI......ApspipvdsD........................KPHSNISSL.TNTGQAG...H..QQ....TSL...................VP......Q.AQSIAVNTP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.11|      27|      28|     889|     915|       3
---------------------------------------------------------------------------
  875-  897 (19.30/ 9.74)	......LDRLlkALRTTQRESLNAAVSDI
  898-  924 (46.49/35.59)	RCVVSMIDRI..AGSAPGNGSRAAVGEDL
  929-  944 (20.33/10.72)	RCRLQARNFI..TN..DGNG.........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15212 with Med15 domain of Kingdom Viridiplantae
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