<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15210

Description Uncharacterized protein
SequenceMSQQQARQPNSSTSVQASSLANIGQSLPGVNQTSTMQNASGMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPAQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQSSMHQQPSLQSQQPNIPLQQQPQQLMGQQPNLQQNQLIGQQNGAMDMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSGLQQQQQNQQPQQLLGTVPNVSNMQRMHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQVQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAHRGLQEVSSSTSADSTAQTGHAGTGDWQEEIYQMIKSLKDLYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKTAVQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPVGQAPNSSISQQQQPSQTLQQHDSHANPQASLSSMSTGLQSSSAAGIQHVPAPSTKNFSAPTQQNGANIQHQADSNLEAAQGGNFNSSQHGSVSSALQQGSTVLMQGTMNAQLQTTSSMLSHNSMSTMQRNGNSMQANASSLQQLKQQHQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPIQQQLQKQQQVQIQVPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRNNYYHQQLKGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSNISSLTNTGQAGHQQTSLVPQAQSIAVNTPGISASPLLAEFTSVDGSQANMPSQAPTKSSAIERPLDRLLKALRTTQRESLNAAVSDIRCVVSMIDRIAGSAPGNGSRAAVGEDLVAMTRCRLQARNFITNDGNGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTASSQAKWQKTEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMSPITPLRLLVPARYPKCSPVLLDKFPDEQRNSDDLSMKANSKFGILLRGLAEPMSLREIARTWDACARKAIAEYAQKTGGGSFSSSYGCWESCVGA
Length1175
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.760
Instability index73.65
Isoelectric point9.20
Molecular weight129490.49
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15210
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     810.84|      76|      77|     158|     233|       1
---------------------------------------------------------------------------
   52-  100 (70.87/11.98)	AQGTSQDI......YA...........AQRQMAGRQQQ...........Q...QSQQ..L........IYHQQ.QMLM.KQ...K..LQQ....NS.L........................M..........QPH
  101-  155 (75.93/13.43)	IQQQ.QSL......LQ............PTQ....MQS..SQQSMMQ.MSSGLHPAQSTV........P.QTQPMAMQsAT...QSGIQQ....N.......................................QL
  158-  233 (145.47/33.26)	VQQSVQSL......LQ...........QPQQSVGRQQQ..QAQSSMH.QQPSLQSQQPNI........PLQQQPQQLM.GQ...QPNLQQ....NQ.L.................IGQQNGAM.....DMQ.QQQR
  244-  300 (76.71/13.65)	VQQTQQMLnqtsmpLH...........QPQQ.LG.......SQSNM....SGLQQQQQN............QQPQQLL.GT...VPNVS.......................................NMQ.RMHM
  301-  363 (86.11/16.33)	LQTKV..........Q...........QPQQ....QQH..AQQPPMGlMQP..QSQH.N.........QLQQSQQHLM.SQfqsQPNQVQ....QQ.L..................GMQQSSM..........QQR
  364-  464 (63.62/ 9.92)	LQTSGGML......LQ...........Q..NNMDQQKQfiQAHRGLQ.EVSSSTSADSTAqtghagtgDWQEEIYQMI.KS...LKDLYF....AE.LselfnkisvklqhvdsiIPPQKPSE.....QYD.RMKS
  465-  545 (75.40/13.27)	FKIMLERI......LQmlqisktavqpAMRDKVPQYEK..QIISILN.SQRR.KPVQPQI..........QQQFQPPV.GQ...APNSSI....SQ.....................QQQPSQ.....TLQ.QHDS
  549-  610 (60.84/ 9.12)	PQASLSSM.......................STGLQSS..SAAGIQH..VPAPSTKNFSA........PTQQNGANIQ.HQ..aDSNLE...........................AAQGGNF.....NSS.Q...
  672-  744 (88.75/17.08)	DHQMMQS........Q...........QMKRQMFQQYQ..QKQQMLQ.QQLPIQQQ.............LQKQ.QQVQ.IQ...VPQLHAgndvNE.L.................KVRQGTAM.....KPGmYQQH
  752-  826 (67.13/10.92)	YHQQLKGA....fpIS...........SPQNNL..QAS..SPQIS.H.HSP..QVDQHN.........PL...PSQVK.TG...TPLHSA....NSpF.................VPSPSPSIapspiPVD.SDKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     277.33|      76|     205|     832|     911|       2
---------------------------------------------------------------------------
  832-  907 (122.06/70.31)	S.LTNTGQAGHQQTSL...VPQAQSIAVNTPGISASPLLAEFTSVDGS..QANMPSQAPTKSSAIERPLD..RLLKALRTTQRE
  955- 1029 (101.30/50.14)	NfITNDGNGASKKMKR...DTSAMPLNVSSAG.SVNDSFKQTFSVDTPdlQSTASSQAKWQKTEVNHA.....LLEEIQEINQQ
 1032- 1088 (53.98/26.91)	............DTELhvcEDDAESFAGTCEGAEGTVIKCTFTAV......AVSPSLKSIFASAQMSPITplRLL.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.62|      19|      20|     616|     635|       3
---------------------------------------------------------------------------
  621-  643 (23.19/10.75)	GSTVLMQGTMNAqLQttsSMLSH
  644-  665 (30.43/11.63)	NSMSTMQRNGNS.MQanaSSLQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15210 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPAQSTVPQTQPMAMQSATQSGIQQNQ
2) LQKQQQVQIQVPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRNNYYHQQLKGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSNISSLTNTGQAGHQQTSLVPQAQSIA
3) MSQQQARQPNSSTSVQASSLANIGQSLPGVNQTSTMQNASGMPQNTMNNGLAQGTSQDIYAAQRQMAG
4) PLLAEFTSVDGSQANMPSQAPTKSSAIERPLDRLLKALRT
5) PVQPQIQQQFQPPVGQAPNSSISQQQQPSQTLQQHDSHANPQASLSSMSTGLQSSSAAGIQHVPAPSTKNFSAPTQQNGANIQHQADSNLEAAQGGNFNSSQHGSVSSALQQGSTVLMQGTMNAQLQTTSSMLSHNSMSTMQRNGNSMQANASSLQQLKQQHQDHQMMQSQQMKRQMFQQYQQKQQ
6) SVQSLLQQPQQSVGRQQQQAQSSMHQQPSLQSQQPNIPLQQQPQQLMGQQPNLQQNQLIGQQNGAMDMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSGLQQQQQNQQPQQLLGTVPNVSNMQRMHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQVQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAHRGLQEVSSSTSADSTAQTGHAGTGD
88
706
1
864
509
161
154
854
68
903
694
412










Molecular Recognition Features






MoRF SequenceStartStop




NANANA