<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP15208

Description Uncharacterized protein
SequenceMDANWRPTQGSDPAAAAAGVDPNAPPSTGGDWRAQLQPEARSRIVNKIMETLKKHLPVSVPEGLNELQKIAVRFEEKIYTAATNQSDYLRKISLKMLSMETKTQQAPGNAQVIPNQNNSAPGLPPQGSNQAQTSVIPLMSQQQARQPNSSTSVQASSLANIGQSLPGVNQTSTMQNASGMPQNTMNNGLAQGTSQDIYAAQRQMAGRQQQQQSQQLIYHQQQMLMKQKLQQNSLMQPHIQQQQSLLQPTQMQSSQQSMMQMSSGLHPAQSTVPQTQPMAMQSATQSGIQQNQLNSVQQSVQSLLQQPQQSVGRQQQQAQSSMHQQPSLQSQQPNIPLQQQPQQLMGQQPNLQQNQLIGQQNGAMDMQQQQRLPVQSNNLLNVQQTQQMLNQTSMPLHQPQQLGSQSNMSGLQQQQQNQQPQQLLGTVPNVSNMQRMHMLQTKVQQPQQQQHAQQPPMGLMQPQSQHNQLQQSQQHLMSQFQSQPNQVQQQLGMQQSSMQQRLQTSGGMLLQQNNMDQQKQFIQAHRGLQEVSSSTSADSTAQTGHAGTGDWQEEIYQMIKSLKDLYFAELSELFNKISVKLQHVDSIIPPQKPSEQYDRMKSFKIMLERILQMLQISKTAVQPAMRDKVPQYEKQIISILNSQRRKPVQPQIQQQFQPPVGQAPNSSISQQQQPSQTLQQHDSHANPQASLSSMSTGLQSSSAAGIQHVPAPSTKNFSAPTQQNGANIQHQADSNLEAAQGGNFNSSQHGSVSSALQQGSTVLMQGTMNAQLQTTSSMLSHNSMSTMQRNGNSMQANASSLQQLKQQHQDHQMMQSQQMKRQMFQQYQQKQQMLQQQLPIQQQLQKQQQVQIQVPQLHAGNDVNELKVRQGTAMKPGMYQQHLGQRNNYYHQQLKGAFPISSPQNNLQASSPQISHHSPQVDQHNPLPSQVKTGTPLHSANSPFVPSPSPSIAPSPIPVDSDKPHSNISSLTNTGQAGHQQTSLVPQAQSIAVNTPGISASPLLAEFTSVDGSQANMPSQAPTKSSAIERPLDRLLKALRTTQRESLNAAVSDIRCVVSMIDRIAGSAPGNGSRAAVGEDLVAMTRCRLQARNFITNDGNGASKKMKRDTSAMPLNVSSAGSVNDSFKQTFSVDTPDLQSTASSQAKWQKTEVNHALLEEIQEINQQLIDTELHVCEDDAESFAGTCEGAEGTVIKCTFTAVAVSPSLKSIFASAQMSPITPLRLLVPARYPKCSPVLLDKFPDEQRNSDDLSMKANSKFGILLRGLAEPMSLREIARTWDACARKAIAEYAQKTGGGSFSSSYGCWESCVGA
Length1313
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.03
Grand average of hydropathy-0.746
Instability index70.31
Isoelectric point9.23
Molecular weight144369.13
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP15208
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|     875.80|      76|      77|     296|     371|       2
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   98-  179 (55.03/10.53)	..................SM......ETKTQ....QAPGNAQvipN..QNNSApgLPPQGS.NQAQTSVI........PLMSQ.QQ...AR....................QPNsstsVQA....SS.L...............anIGQSlpgvNQTS.....TMQ.N..ASG
  190-  238 (69.44/15.92)	A...........QG.TSQDI......YAAQR....QMAGRQQ...Q............Q....QSQQ..L........IYHQQ.QMLM.KQ....................K......LQQ....NS.L............................M............QPH
  239-  293 (69.01/15.76)	I...........QQ.Q.QSL......LQ.PT.........QM...Q..SSQQS..MMQMSSgLHPAQSTV........P.QTQPMAMQsAT....................QSG....IQQ....N.............................................QL
  296-  371 (145.56/44.41)	V...........QQ.SVQSL......LQQPQ....QSVGRQQ...Q..QAQSS..MHQQPS.LQSQQPNI........PLQQQPQQLM.GQ....................QPN....LQQ....NQ.L.................IGQQ....NGAM.....DMQ.Q..QQR
  382-  438 (75.59/18.22)	V...........QQ.TQQMLnqtsmpLHQPQ....Q.LG..........SQSN..M...SG.LQQQQQN............QQPQQLL.GT....................VPN....VS...........................................NMQ.R..MHM
  439-  501 (59.95/12.37)	L...........QT.KV..........QQP...........Q...Q..QQ......H.......AQQPPM........GL.MQP.......qsqhnqlqqsqqhlmsqfqsQPN....QVQ....QQ.L..................GMQ....QSSM............QQR
  502-  602 (64.04/13.90)	L...........QT.SGGML......LQQ......NNMDQQK...QfiQAHRG..LQEVSS.STSADSTAqtghagtgDWQEEIYQMI.KS....................LKD....LYF....AE.LselfnkisvklqhvdsiIPPQ....KPSE.....QYD.R..MKS
  603-  683 (74.32/17.74)	FkimlerilqmlQI.SKTAV......QPAMR....DKVPQYE...K..QIISI..LNSQRR..KPVQPQI..........QQQFQPPV.GQ....................APN....SSI....SQ.....................QQ....QPSQ.....TLQ.Q..HDS
  687-  748 (59.81/12.31)	P...........QA.SLSSM................STGLQS...S..SAAGI..QH.VPA.PSTKNFSA........PTQQNGANIQ.HQ...................aDSN....LE...........................AAQ....GGNF.....NSS.Q.....
  749-  808 (49.70/ 8.53)	.............HgSVSSA......LQQGStvlmQGTMNAQ...L..QTTSS..MLSHNS.MST..............MQRNGNS................................MQA....N..............................AS.....SLQ.QlkQQH
  810-  882 (87.72/22.76)	D...........HQ.MMQS........QQMK....RQMFQQY...Q..QKQQM..LQQQLP.IQQQ.............LQKQ.QQVQ.IQ....................VPQ....LHAgndvNE.L.................KVRQ....GTAM.....KPGmY..QQH
  890-  964 (65.65/14.50)	Y...........HQ.QLKGA....fpISSPQ....NNL..QA...S..SPQIS...HHSP...QVDQHN.........PL...PSQVK.TG....................TPL....HSA....NSpF.................VPSP....SPSIapspiPVD.S..DKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.66|      12|      44|    1069|    1080|       3
---------------------------------------------------------------------------
 1069- 1080 (21.28/13.47)	PGNGSRAAVGED
 1098- 1109 (19.93/12.10)	DGNGASKKMKRD
 1114- 1125 (19.45/11.61)	PLNVSSAGSVND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.59|      11|      20|       2|      12|       4
---------------------------------------------------------------------------
    2-   12 (22.96/13.01)	DANWRPTQGSD
   21-   31 (22.63/12.69)	DPNAPPSTGGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.81|      19|      20|     984|    1002|       5
---------------------------------------------------------------------------
  978-  996 (31.96/15.01)	GHQQTSLVPQAQSI...AVNTP
  997- 1018 (25.85/10.68)	GISASPLLAEFTSVdgsQANMP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP15208 with Med15 domain of Kingdom Viridiplantae
Unable to open file!